GCF_007990525.1_ASM799052v1_genomic - 2 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AP019823.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	1,463,715	1,504,926
Region 1.2	NRPS-like	2,285,578	2,328,058

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	T3PKS	1,463,715	1,504,926
Region 1.2	NRPS-like	2,285,578	2,328,058

No secondary metabolite regions were found in these records:: NZ_AP019824.1; NZ_AP019825.1; NZ_AP019826.1

Compact view

NZ_AP019823.1 - Region 1 - T3PKS

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Location: 1,463,715 - 1,504,926 nt. (total: 41,212 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.25	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000286.1	0.19	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001594.1	0.18	Alkaloid	fischerindole L	Fischerella muscicola UTEX 1829
BGC0001525.1	0.17	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.17	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000774.1	0.16	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000558.1	0.16	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.58	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000286.1	0.51	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001594.1	0.50	Alkaloid	fischerindole L	Fischerella muscicola UTEX 1829
BGC0001525.1	0.48	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.48	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000774.1	0.47	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000504.1	0.46	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_AP019823.1 - Region 2 - NRPS-like

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Location: 2,285,578 - 2,328,058 nt. (total: 42,481 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000410.1	0.20	NRP	pseudomonine	Pseudomonas fluorescens
BGC0000851.1	0.16	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0001579.1	0.16	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000600.1	0.16	RiPP	thurincin H	Bacillus thuringiensis
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0000521.1	0.16	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001660.1	0.16	RiPP	mathermycin	Marinactinospora thermotolerans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000410.1	0.52	NRP	pseudomonine	Pseudomonas fluorescens
BGC0000851.1	0.47	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0001579.1	0.47	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000600.1	0.46	RiPP	thurincin H	Bacillus thuringiensis
BGC0001222.1	0.46	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000539.1	0.46	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0000521.1	0.46	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001660.1	0.46	RiPP	mathermycin	Marinactinospora thermotolerans

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 2285577 - 2328058:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_2167

Search NORINE for peptide: strict or relaxed

AMP-binding (5..415): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vlaIVGgpVK
Nearest Stachelhaus code:: lys-b
Stachelhaus code match:: 50% (weak)