GCF_000687955.1_ASM68795v1_genomic - 7 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_JIAA01000001 (original name was: NZ_JIAA01000001.1)

Region	Type	From	To
Region 1	cyclic-lactone-autoinducer	550,376	569,392
Region 2	ranthipeptide	712,704	731,228
Region 3	cyclic-lactone-autoinducer,ranthipeptide	786,700	808,829
Region 4	NRPS	1,210,992	1,253,181
Region 5	cyclic-lactone-autoinducer	2,025,776	2,043,974
Region 6	cyclic-lactone-autoinducer	2,254,036	2,272,713
Region 7	cyclic-lactone-autoinducer	2,955,542	2,982,593

c00001_NZ_JIAA.. - Region 1 - cyclic-lactone-autoinducer

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Location: 550,376 - 569,392 nt. (total: 19,017 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.18	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000774.1	0.17	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001120.1	0.16	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001588.1	0.15	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0001589.1	0.15	Saccharide	exopolysaccharides	Burkholderia cenocepacia J2315
BGC0000815.1	0.15	Alkaloid	loline	Epichloe uncinata
BGC0000886.1	0.14	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0001994.1	0.14	Other	β-ethynylserine	Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0001838.1	0.09	NRP	WLIP	Pseudomonas putida
BGC0001312.1	0.08	NRP	viscosin	Pseudomonas fluorescens SBW25

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.49	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000774.1	0.48	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001120.1	0.47	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001588.1	0.45	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0001589.1	0.45	Saccharide	exopolysaccharides	Burkholderia cenocepacia J2315
BGC0000815.1	0.45	Alkaloid	loline	Epichloe uncinata
BGC0000886.1	0.44	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0001994.1	0.43	Other	β-ethynylserine	Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0001838.1	0.33	NRP	WLIP	Pseudomonas putida
BGC0001312.1	0.30	NRP	viscosin	Pseudomonas fluorescens SBW25

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00001_NZ_JIAA.. - Region 2 - ranthipeptide

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Location: 712,704 - 731,228 nt. (total: 18,525 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.16	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000774.1	0.15	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000886.1	0.14	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000815.1	0.13	Alkaloid	loline	Epichloe uncinata
BGC0001796.1	0.07	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0000714.1	0.07	Saccharide	sisomicin	Micromonospora inyonensis
BGC0001603.1	0.07	Saccharide	gentamicin	Micromonospora echinospora
BGC0001312.1	0.06	NRP	viscosin	Pseudomonas fluorescens SBW25
BGC0000696.1	0.06	Saccharide	gentamicin	Micromonospora echinospora
BGC0000457.1	0.05	NRP	vicibactin	Rhizobium etli CFN 42

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.47	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000774.1	0.45	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000886.1	0.43	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000815.1	0.42	Alkaloid	loline	Epichloe uncinata
BGC0001796.1	0.29	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0000714.1	0.27	Saccharide	sisomicin	Micromonospora inyonensis
BGC0001603.1	0.27	Saccharide	gentamicin	Micromonospora echinospora
BGC0001312.1	0.25	NRP	viscosin	Pseudomonas fluorescens SBW25
BGC0000696.1	0.25	Saccharide	gentamicin	Micromonospora echinospora
BGC0000457.1	0.23	NRP	vicibactin	Rhizobium etli CFN 42

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00001_NZ_JIAA.. - Region 3 - cyclic-lactone-autoinducer,ranthipeptide

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Location: 786,700 - 808,829 nt. (total: 22,130 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.37	Other	nucleocidin	Streptomyces calvus
BGC0001573.1	0.20	Alkaloid	dihydrolysergic acid	Claviceps africana
BGC0000348.1	0.20	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001241.1	0.18	Terpene	ergotamine	Claviceps fusiformis
BGC0001267.1	0.18	Terpene	lysergic acid, elymoclavine	Claviceps fusiformis
BGC0000811.1	0.18	Alkaloid	fumigaclavine C	Aspergillus fumigatus Af293
BGC0001304.1	0.15	Polyketide	aflavarin	Aspergillus flavus NRRL3357
BGC0001575.1	0.13	NRP	dipeptide aldehydes	Ruminococcus sp. 5_1_39BFAA
BGC0001142.1	0.13	NRP	tryptoquialanine	Penicillium aethiopicum
BGC0001591.1	0.12	Other	fatty acid enol ester	uncultured bacterium CSLC2

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.50	Other	nucleocidin	Streptomyces calvus
BGC0000348.1	0.39	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001573.1	0.38	Alkaloid	dihydrolysergic acid	Claviceps africana
BGC0001241.1	0.36	Terpene	ergotamine	Claviceps fusiformis
BGC0001267.1	0.36	Terpene	lysergic acid, elymoclavine	Claviceps fusiformis
BGC0000811.1	0.35	Alkaloid	fumigaclavine C	Aspergillus fumigatus Af293
BGC0001304.1	0.32	Polyketide	aflavarin	Aspergillus flavus NRRL3357
BGC0001575.1	0.30	NRP	dipeptide aldehydes	Ruminococcus sp. 5_1_39BFAA
BGC0001142.1	0.28	NRP	tryptoquialanine	Penicillium aethiopicum
BGC0001591.1	0.28	Other	fatty acid enol ester	uncultured bacterium CSLC2

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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c00001_NZ_JIAA.. - Region 4 - NRPS

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Location: 1,210,992 - 1,253,181 nt. (total: 42,190 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000500.1	0.19	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000502.1	0.19	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000600.1	0.19	RiPP	thurincin H	Bacillus thuringiensis
BGC0001407.1	0.18	RiPP	bicereucin	Bacillus cereus SJ1
BGC0001758.1	0.18	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001441.1	0.18	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001825.1	0.18	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001844.1	0.18	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001615.1	0.18	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001128.1	0.17	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000500.1	0.51	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000502.1	0.51	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000600.1	0.51	RiPP	thurincin H	Bacillus thuringiensis
BGC0001407.1	0.50	RiPP	bicereucin	Bacillus cereus SJ1
BGC0001758.1	0.49	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001441.1	0.49	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001825.1	0.49	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001844.1	0.49	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001615.1	0.49	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001128.1	0.49	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00001_NZ_JIAA.. - Region 5 - cyclic-lactone-autoinducer

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Location: 2,025,776 - 2,043,974 nt. (total: 18,199 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000703.1	0.20	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001521.1	0.15	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001540.1	0.13	Other	CC-1065	Streptomyces zelensis
BGC0000393.1	0.12	NRP, Polyketide	myxoprincomide-c506	Myxococcus xanthus DK 1622
BGC0001860.1	0.07	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.07	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.06	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0000709.1	0.06	Saccharide	neomycin	Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0001002.1	0.06	NRP, Polyketide	jawsamycin	Streptomyces roseoverticillatus
BGC0001155.1	0.05	RiPP	GE2270	Planobispora rosea

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000703.1	0.52	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001521.1	0.45	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001540.1	0.42	Other	CC-1065	Streptomyces zelensis
BGC0000393.1	0.39	NRP, Polyketide	myxoprincomide-c506	Myxococcus xanthus DK 1622
BGC0001860.1	0.29	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.29	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.25	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0000709.1	0.25	Saccharide	neomycin	Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0001002.1	0.24	NRP, Polyketide	jawsamycin	Streptomyces roseoverticillatus
BGC0001155.1	0.24	RiPP	GE2270	Planobispora rosea

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00001_NZ_JIAA.. - Region 6 - cyclic-lactone-autoinducer

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Location: 2,254,036 - 2,272,713 nt. (total: 18,678 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.24	RiPP	circularin A	Clostridium beijerinckii
BGC0001526.1	0.22	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.18	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000904.1	0.17	Other	FR-900098	Streptomyces rubellomurinus
BGC0001861.1	0.16	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000517.1	0.16	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000555.1	0.16	RiPP	staphylococcin C55 α, staphylococcin C55 β	Staphylococcus aureus
BGC0001311.1	0.16	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.57	RiPP	circularin A	Clostridium beijerinckii
BGC0001526.1	0.55	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.49	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000904.1	0.48	Other	FR-900098	Streptomyces rubellomurinus
BGC0001861.1	0.47	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000517.1	0.47	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0000487.1	0.47	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000555.1	0.46	RiPP	staphylococcin C55 α, staphylococcin C55 β	Staphylococcus aureus
BGC0001311.1	0.46	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00001_NZ_JIAA.. - Region 7 - cyclic-lactone-autoinducer

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Location: 2,955,542 - 2,982,593 nt. (total: 27,052 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000511.1	0.17	RiPP	ericin S	Bacillus subtilis
BGC0000559.1	0.17	RiPP	subtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001654.1	0.16	Saccharide	lipooligosaccharide	Bacteroides thetaiotaomicron VPI-5482
BGC0000386.1	0.15	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0000766.1	0.14	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0001650.1	0.12	NRP	Le-pyrrolopyrazines	Lysobacter enzymogenes
BGC0000796.1	0.11	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000221.1	0.11	Polyketide	erdacin	uncultured soil bacterium V167
BGC0002007.1	0.10	Terpene	atolypene A, atolypene B	Amycolatopsis tolypomycina
BGC0000433.1	0.10	NRP	surfactin	Bacillus velezensis FZB42

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000511.1	0.48	RiPP	ericin S	Bacillus subtilis
BGC0000559.1	0.48	RiPP	subtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001654.1	0.46	Saccharide	lipooligosaccharide	Bacteroides thetaiotaomicron VPI-5482
BGC0000386.1	0.45	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0000766.1	0.44	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0001650.1	0.39	NRP	Le-pyrrolopyrazines	Lysobacter enzymogenes
BGC0000796.1	0.38	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000221.1	0.38	Polyketide	erdacin	uncultured soil bacterium V167
BGC0002007.1	0.36	Terpene	atolypene A, atolypene B	Amycolatopsis tolypomycina
BGC0000433.1	0.35	NRP	surfactin	Bacillus velezensis FZB42

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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