GCF_000826085.1_Nigerium_massiliensis_SIT7_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CCYM01000002 (original name was: NZ_CCYM01000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	terpene	289,950	313,386	carotenoid	Terpene	21%
Region 2.2	NAPAA,betalactone	695,494	731,999

NZ_CCYM01000003 (original name was: NZ_CCYM01000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	lanthipeptide-class-iii	1,155,058	1,177,724

No secondary metabolite regions were found in these records:: NZ_CCYM01000001 (original name was: NZ_CCYM01000001.1)

Compact view

c00002_NZ_CCYM.. - Region 1 - terpene

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Location: 289,950 - 313,386 nt. (total: 23,437 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.33	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000656.1	0.33	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000664.1	0.28	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000642.1	0.27	Terpene	carotenoid	Enterobacteriaceae bacterium DC413
BGC0000638.1	0.26	Terpene	carotenoid	Pantoea ananatis
BGC0001911.1	0.26	Terpene	raimonol	Streptomyces anulatus
BGC0000640.1	0.26	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0001910.1	0.25	Terpene	cyslabdan	Streptomyces cyslabdanicus
BGC0000648.1	0.25	Terpene	carotenoid	Myxococcus xanthus
BGC0001227.1	0.24	Terpene	isorenieratene	Streptomyces collinus Tu 365

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.66	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000656.1	0.66	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000664.1	0.62	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000642.1	0.60	Terpene	carotenoid	Enterobacteriaceae bacterium DC413
BGC0000638.1	0.60	Terpene	carotenoid	Pantoea ananatis
BGC0001911.1	0.59	Terpene	raimonol	Streptomyces anulatus
BGC0000640.1	0.59	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0001910.1	0.59	Terpene	cyslabdan	Streptomyces cyslabdanicus
BGC0000648.1	0.59	Terpene	carotenoid	Myxococcus xanthus
BGC0001227.1	0.57	Terpene	isorenieratene	Streptomyces collinus Tu 365

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00002_NZ_CCYM.. - Region 2 - NAPAA,betalactone

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Location: 695,494 - 731,999 nt. (total: 36,506 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and PP-binding and TIGR02353)
betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000234.1	0.48	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000427.1	0.43	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.43	NRP	indigoidine	Streptomyces chromofuscus
BGC0001399.1	0.41	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001135.1	0.37	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.37	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001131.1	0.36	NRP	ambactin	Xenorhabdus miraniensis
BGC0001479.1	0.36	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001128.1	0.36	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001641.1	0.36	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000234.1	0.58	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0001483.1	0.55	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0000427.1	0.55	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.54	NRP	indigoidine	Streptomyces chromofuscus
BGC0001940.1	0.53	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0001399.1	0.53	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000843.1	0.51	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0001796.1	0.51	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0001135.1	0.50	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.50	NRP	icosalide A, icosalide B	Burkholderia gladioli

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 695493 - 731999:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_633

Search NORINE for peptide: strict or relaxed

AMP-binding (42..428): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DfEHNgTaSK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 70% (weak)

c00003_NZ_CCYM.. - Region 1 - lanthipeptide-class-iii

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Location: 1,155,058 - 1,177,724 nt. (total: 22,667 nt) Show pHMM detection rules used

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000553.1	0.34	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000563.1	0.32	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000528.1	0.24	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000518.1	0.22	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000554.1	0.22	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000501.1	0.21	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000513.1	0.21	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000551.1	0.21	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.21	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000516.1	0.20	RiPP	geobacillin II	Geobacillus thermodenitrificans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000553.1	0.67	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000563.1	0.66	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000528.1	0.57	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000518.1	0.56	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000554.1	0.55	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000501.1	0.54	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000513.1	0.54	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000551.1	0.54	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.53	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000516.1	0.52	RiPP	geobacillin II	Geobacillus thermodenitrificans

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Lanthipeptides

Core peptide predictions

No core peptides found.