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Overview
13.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LN623542.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | terpene | 141,001 | 161,876 | carotenoid | Terpene | 28%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | terpene | 141,001 | 161,876 | carotenoid | Terpene | 28%

No secondary metabolite regions were found in these records:
  NZ_LN623534.1
  NZ_LN623539.1
  NZ_LN623527.1
  NZ_LN623531.1
  NZ_LN623532.1
  NZ_LN623533.1
  NZ_LN623535.1
  NZ_LN623536.1
  NZ_LN623537.1
  NZ_LN623538.1
  NZ_LN623540.1
  NZ_LN623541.1
  NZ_LN623543.1

Compact view
NZ_LN623542.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 141,001 - 161,876 nt. (total: 20,876 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
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Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.32 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000650.1 |  | 0.26 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0001910.1 |  | 0.26 | Terpene | cyslabdan | Streptomyces cyslabdanicus
BGC0001911.1 |  | 0.26 | Terpene | raimonol | Streptomyces anulatus
BGC0000648.1 |  | 0.25 | Terpene | carotenoid | Myxococcus xanthus
BGC0000286.1 |  | 0.22 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000664.1 |  | 0.22 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000644.1 |  | 0.21 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000649.1 |  | 0.20 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001227.1 |  | 0.19 | Terpene | isorenieratene | Streptomyces collinus Tu 365

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.65 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000650.1 |  | 0.59 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0001910.1 |  | 0.59 | Terpene | cyslabdan | Streptomyces cyslabdanicus
BGC0001911.1 |  | 0.59 | Terpene | raimonol | Streptomyces anulatus
BGC0000648.1 |  | 0.59 | Terpene | carotenoid | Myxococcus xanthus
BGC0000286.1 |  | 0.55 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000664.1 |  | 0.55 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000644.1 |  | 0.54 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000649.1 |  | 0.52 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001227.1 |  | 0.52 | Terpene | isorenieratene | Streptomyces collinus Tu 365

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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