GCF_024397795.1_ASM2439779v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP072983.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	327,742	342,118	gassericin T	RiPP	33%
Region 1.2	RiPP-like	387,494	399,656
Region 1.3	lanthipeptide-class-iv	1,389,662	1,412,187
Region 1.4	lanthipeptide-class-iii	1,620,585	1,643,095

NZ_CP072984.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	LAP	1	19,578	listeriolysin S	RiPP:LAP	50%

No secondary metabolite regions were found in these records:: NZ_CP072985.1

Compact view

NZ_CP072983.1 - Region 1 - RiPP-like

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Location: 327,742 - 342,118 nt. (total: 14,377 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.25	RiPP	coagulin	Bacillus coagulans
BGC0000619.1	0.21	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.21	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.21	RiPP	gassericin E	Lactobacillus gasseri
BGC0000624.1	0.16	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001229.1	0.15	RiPP	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1
BGC0001928.1	0.15	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000768.1	0.14	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0000759.1	0.14	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.58	RiPP	coagulin	Bacillus coagulans
BGC0000619.1	0.54	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.54	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.54	RiPP	gassericin E	Lactobacillus gasseri
BGC0000624.1	0.47	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001229.1	0.46	RiPP	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1
BGC0001928.1	0.45	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000768.1	0.43	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000294.1	0.43	NRP	acinetobactin	Acinetobacter baumannii
BGC0000759.1	0.43	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP072983.1 - Region 2 - RiPP-like

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Location: 387,494 - 399,656 nt. (total: 12,163 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.22	RiPP	coagulin	Bacillus coagulans
BGC0000619.1	0.17	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.17	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.17	RiPP	gassericin E	Lactobacillus gasseri
BGC0001862.1	0.16	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.16	RiPP	pallidocin	Aeribacillus pallidus
BGC0001861.1	0.16	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0001863.1	0.16	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000484.1	0.15	RiPP	glycocin F	Lactobacillus plantarum
BGC0000500.1	0.15	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.55	RiPP	coagulin	Bacillus coagulans
BGC0000619.1	0.48	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.48	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.48	RiPP	gassericin E	Lactobacillus gasseri
BGC0001862.1	0.46	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.46	RiPP	pallidocin	Aeribacillus pallidus
BGC0001861.1	0.46	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0001863.1	0.46	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000484.1	0.46	RiPP	glycocin F	Lactobacillus plantarum
BGC0000500.1	0.44	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP072983.1 - Region 3 - lanthipeptide-class-iv

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Location: 1,389,662 - 1,412,187 nt. (total: 22,526 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000551.1	0.22	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.21	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000500.1	0.19	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.19	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000496.1	0.19	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001407.1	0.18	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000534.1	0.16	RiPP	mutacin K8	Streptococcus mutans
BGC0000509.1	0.16	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000543.1	0.16	RiPP	pep5	Staphylococcus epidermidis
BGC0000560.1	0.16	RiPP	subtilomycin	Bacillus subtilis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000551.1	0.55	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.54	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000500.1	0.51	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.51	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000496.1	0.51	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001407.1	0.50	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000534.1	0.47	RiPP	mutacin K8	Streptococcus mutans
BGC0000509.1	0.46	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000543.1	0.46	RiPP	pep5	Staphylococcus epidermidis
BGC0000560.1	0.46	RiPP	subtilomycin	Bacillus subtilis

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_1267 - Putative Class III

ctg1_1269 leader / core peptide: MENSNILNLQKLNVNGTSSQAL - LDhbDhaKRIDhaVFCFNKHGKHKMRNIYLPPILFA

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lanthipeptides

Core peptide predictions

ctg1_1269 - Class III

Cleavage pHMM score: -2.70

RODEO score: 0

Monoisotopic mass: 3504.0 Da

Molecular weight: 3506.2 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 3524.2 Da N = 1; 3542.3 Da N = 2

NZ_CP072983.1 - Region 4 - lanthipeptide-class-iii

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Location: 1,620,585 - 1,643,095 nt. (total: 22,511 nt) Show pHMM detection rules used

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000501.1	0.31	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000551.1	0.31	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.27	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000513.1	0.26	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000518.1	0.22	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.20	NRP	indigoidine	Streptomyces chromofuscus
BGC0000554.1	0.20	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.19	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000500.1	0.19	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000501.1	0.65	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000551.1	0.64	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.60	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000513.1	0.60	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000518.1	0.54	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.53	NRP	indigoidine	Streptomyces chromofuscus
BGC0000554.1	0.52	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.51	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000500.1	0.51	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Lanthipeptides

Core peptide predictions

No core peptides found.

NZ_CP072984.1 - Region 1 - LAP

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Location: 1 - 19,578 nt. (total: 19,578 nt) Show pHMM detection rules used

Region on contig edge.

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000568.1	0.23	RiPP	microcin B17	Escherichia coli
BGC0001171.1	0.20	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0001743.1	0.16	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0001894.1	0.14	Saccharide	heteropolysaccharide (HePS)	Lactobacillus plantarum
BGC0000607.1	0.14	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0000736.1	0.13	Saccharide	capsular polysaccharide	Mannheimia haemolytica
BGC0000768.1	0.13	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000568.1	0.56	RiPP	microcin B17	Escherichia coli
BGC0001171.1	0.52	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0000617.1	0.47	RiPP	coagulin	Bacillus coagulans
BGC0001222.1	0.47	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0001743.1	0.46	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0001894.1	0.43	Saccharide	heteropolysaccharide (HePS)	Lactobacillus plantarum
BGC0000607.1	0.43	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0000736.1	0.42	Saccharide	capsular polysaccharide	Mannheimia haemolytica
BGC0000768.1	0.41	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names