GCF_002865995.1_ASM286599v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP014150.1

Region	Type	From	To
Region 1.1	cyclic-lactone-autoinducer	1,028,280	1,047,926
Region 1.2	cyclic-lactone-autoinducer	1,107,202	1,126,444
Region 1.3	cyclic-lactone-autoinducer	3,001,944	3,022,728
Region 1.4	ranthipeptide	3,106,861	3,128,521

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	1,028,280	1,047,926
Region 1.2	cyclic-lactone-autoinducer	1,107,202	1,126,444
Region 1.3	cyclic-lactone-autoinducer	3,001,944	3,022,728
Region 1.4	ranthipeptide	3,106,861	3,128,521

No secondary metabolite regions were found in these records:: NZ_CP014149.1

Compact view

NZ_CP014150.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1,028,280 - 1,047,926 nt. (total: 19,647 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000527.1	0.17	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000928.1	0.15	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.15	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0001788.1	0.13	RiPP	suicin 65	Streptococcus suis
BGC0001727.1	0.13	RiPP	paenilan	Paenibacillus polymyxa E681
BGC0000536.1	0.13	RiPP	nisin Q	Lactococcus lactis
BGC0001789.1	0.12	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.12	RiPP	nisin U	Streptococcus uberis
BGC0000540.1	0.12	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000549.1	0.11	RiPP	salivaricin D	Streptococcus salivarius

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000527.1	0.48	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000928.1	0.45	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.45	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0001788.1	0.41	RiPP	suicin 65	Streptococcus suis
BGC0001727.1	0.41	RiPP	paenilan	Paenibacillus polymyxa E681
BGC0000536.1	0.41	RiPP	nisin Q	Lactococcus lactis
BGC0001789.1	0.41	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.40	RiPP	nisin U	Streptococcus uberis
BGC0000540.1	0.40	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000549.1	0.38	RiPP	salivaricin D	Streptococcus salivarius

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP014150.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 1,107,202 - 1,126,444 nt. (total: 19,243 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	cyclic-lactone-autoinducer	Similarity score	Type	Compound(s)	Organism
BGC0001906.1		0.11	Polyketide	naphthalene	Daldinia eschscholzii IFB-TL01

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0001906.1		0.38	Polyketide	naphthalene	Daldinia eschscholzii IFB-TL01

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP014150.1 - Region 3 - cyclic-lactone-autoinducer

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Location: 3,001,944 - 3,022,728 nt. (total: 20,785 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000928.1	0.16	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.16	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000883.1	0.14	Other	arginomycin	Streptomyces arginensis
BGC0000537.1	0.13	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.13	RiPP	nisin Q	Lactococcus lactis
BGC0001789.1	0.13	RiPP	suicin 90-1330	Streptococcus suis
BGC0000535.1	0.13	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000515.1	0.13	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000557.1	0.12	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000506.1	0.12	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000928.1	0.47	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.47	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000883.1	0.43	Other	arginomycin	Streptomyces arginensis
BGC0000537.1	0.41	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.41	RiPP	nisin Q	Lactococcus lactis
BGC0001789.1	0.41	RiPP	suicin 90-1330	Streptococcus suis
BGC0000535.1	0.41	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000515.1	0.41	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000557.1	0.40	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000506.1	0.40	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP014150.1 - Region 4 - ranthipeptide

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Location: 3,106,861 - 3,128,521 nt. (total: 21,661 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.18	Other	nucleocidin	Streptomyces calvus
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001935.1	0.11	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.11	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.10	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001943.1	0.05	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.05	NRP	vioprolide A	Cystobacter sp.
BGC0001591.1	0.05	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.05	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001704.1	0.05	Other	nocuolin A	Nodularia sp. HBU26

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.50	Other	nucleocidin	Streptomyces calvus
BGC0000703.1	0.43	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001935.1	0.38	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.38	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.35	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001943.1	0.24	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.24	NRP	vioprolide A	Cystobacter sp.
BGC0001591.1	0.23	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.23	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001704.1	0.22	Other	nocuolin A	Nodularia sp. HBU26

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names