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Overview
4.1
5.1
6.1
6.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LN611423.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ectoine | 415,836 | 426,222 | ectoine | Other | 66%

NZ_LN611424.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 5.1 | ladderane,arylpolyene | 123,027 | 167,041 |

NZ_LN611425.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 6.1 | T3PKS | 602,975 | 644,063 |
Region 6.2 | betalactone | 701,450 | 728,156 | fengycin | NRP | 40%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ectoine | 415,836 | 426,222 | ectoine | Other | 66%
Region 5.1 | ladderane,arylpolyene | 123,027 | 167,041 |
Region 6.1 | T3PKS | 602,975 | 644,063 |
Region 6.2 | betalactone | 701,450 | 728,156 | fengycin | NRP | 40%

No secondary metabolite regions were found in these records:
  NZ_LN611419.1
  NZ_LN611420.1
  NZ_LN611421.1
  NZ_LN611422.1

Compact view
NZ_LN611423.1 - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 415,836 - 426,222 nt. (total: 10,387 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000852.1 |  | 0.52 | Other | ectoine | Sporosarcina pasteurii
BGC0000858.1 |  | 0.41 | Other | ectoine | Methylobacter marinus
BGC0000860.1 |  | 0.38 | Other | ectoine | Methylarcula marina
BGC0000859.1 |  | 0.34 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000855.1 |  | 0.33 | Other | ectoine | Methylomicrobium kenyense
BGC0000856.1 |  | 0.33 | Other | ectoine | Methylophaga thalassica
BGC0000853.1 |  | 0.33 | Other | ectoine | Streptomyces anulatus
BGC0000857.1 |  | 0.31 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.29 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000703.1 |  | 0.17 | Saccharide | kanamycin | Streptomyces kanamyceticus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000852.1 |  | 0.80 | Other | ectoine | Sporosarcina pasteurii
BGC0000858.1 |  | 0.73 | Other | ectoine | Methylobacter marinus
BGC0000860.1 |  | 0.70 | Other | ectoine | Methylarcula marina
BGC0000859.1 |  | 0.67 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000855.1 |  | 0.67 | Other | ectoine | Methylomicrobium kenyense
BGC0000856.1 |  | 0.67 | Other | ectoine | Methylophaga thalassica
BGC0000853.1 |  | 0.66 | Other | ectoine | Streptomyces anulatus
BGC0000857.1 |  | 0.64 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.63 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000703.1 |  | 0.48 | Saccharide | kanamycin | Streptomyces kanamyceticus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LN611424.1 - Region 1 - arylpolyene,ladderane
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 123,027 - 167,041 nt. (total: 44,015 nt) Show pHMM detection rules used
ladderane: ladderane
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ladderane | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0001075.1 |  |  | 0.50 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000843.1 |  |  | 0.39 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate | Streptomyces clavuligerus ATCC 27064
BGC0001197.1 |  |  | 0.38 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000228.1 |  |  | 0.38 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000204.1 |  |  | 0.37 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000234.1 |  |  | 0.36 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001723.1 |  |  | 0.35 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000723.1 |  |  | 0.33 | Saccharide | β-D-galactosylvalidoxylamine-A | Streptomyces hygroscopicus subsp. limoneus
BGC0000259.1 |  |  | 0.33 | Polyketide | prodigiosin | Serratia marcescens
BGC0000663.1 |  |  | 0.33 | Terpene | hopene | Streptomyces coelicolor A3(2)

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001075.1 |  | 0.58 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000843.1 |  | 0.52 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate | Streptomyces clavuligerus ATCC 27064
BGC0001197.1 |  | 0.51 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000228.1 |  | 0.51 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000204.1 |  | 0.50 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000234.1 |  | 0.50 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000794.1 |  | 0.49 | Saccharide | S-layer glycan | Geobacillus stearothermophilus
BGC0001723.1 |  | 0.49 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000723.1 |  | 0.48 | Saccharide | β-D-galactosylvalidoxylamine-A | Streptomyces hygroscopicus subsp. limoneus
BGC0000259.1 |  | 0.47 | Polyketide | prodigiosin | Serratia marcescens

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LN611425.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 602,975 - 644,063 nt. (total: 41,089 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.34 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.32 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001938.1 |  | 0.31 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001310.1 |  | 0.26 | Terpene | naringenin | Streptomyces clavuligerus ATCC 27064
BGC0000905.1 |  | 0.20 | Other | heme D1 | Heliobacillus mobilis
BGC0001831.1 |  | 0.20 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000888.1 |  | 0.16 | Other | bacilysin | Bacillus sp. CS93
BGC0001184.1 |  | 0.15 | Other | bacilysin | Bacillus velezensis FZB42
BGC0001654.1 |  | 0.15 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000887.1 |  | 0.14 | Alkaloid | saxitoxin, gonyautoxin 2, gonyautoxin 3, toxin C2, toxin C3, gonyautoxin 5, decarbamoylsaxitoxin, decarbamoylgonyautoxin 2, decarbamoylgonyautoxin 3 | Dolichospermum circinale AWQC131C

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.67 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.65 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001938.1 |  | 0.65 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001310.1 |  | 0.59 | Terpene | naringenin | Streptomyces clavuligerus ATCC 27064
BGC0000905.1 |  | 0.53 | Other | heme D1 | Heliobacillus mobilis
BGC0001831.1 |  | 0.52 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000888.1 |  | 0.47 | Other | bacilysin | Bacillus sp. CS93
BGC0001184.1 |  | 0.45 | Other | bacilysin | Bacillus velezensis FZB42
BGC0001654.1 |  | 0.45 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000887.1 |  | 0.44 | Alkaloid | saxitoxin, gonyautoxin 2, gonyautoxin 3, toxin C2, toxin C3, gonyautoxin 5, decarbamoylsaxitoxin, decarbamoylgonyautoxin 2, decarbamoylgonyautoxin 3 | Dolichospermum circinale AWQC131C

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_LN611425.1 - Region 2 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 701,450 - 728,156 nt. (total: 26,707 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001465.1 |  | 0.22 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000890.1 |  | 0.22 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.22 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000260.1 |  | 0.17 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0000234.1 |  | 0.17 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001387.1 |  | 0.16 | Other | nucleocidin | Streptomyces calvus
BGC0002034.1 |  | 0.16 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6
BGC0000768.1 |  | 0.16 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0000706.1 |  | 0.16 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001983.1 |  | 0.15 | Other | triacsins | Kitasatospora aureofaciens

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001465.1 |  | 0.56 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000890.1 |  | 0.55 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.55 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000260.1 |  | 0.49 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0000234.1 |  | 0.49 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001387.1 |  | 0.47 | Other | nucleocidin | Streptomyces calvus
BGC0002034.1 |  | 0.46 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6
BGC0000768.1 |  | 0.46 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0000706.1 |  | 0.46 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001983.1 |  | 0.46 | Other | triacsins | Kitasatospora aureofaciens

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names