GCF_001886875.1_ASM188687v1_genomic - 7 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP013239.1

Region	Type	From	To
Region 1.1	cyclic-lactone-autoinducer	1,096,926	1,115,034
Region 1.2	cyclic-lactone-autoinducer	1,394,397	1,412,867
Region 1.3	lassopeptide	2,873,266	2,899,382
Region 1.4	cyclic-lactone-autoinducer	2,940,612	2,961,148
Region 1.5	ranthipeptide	3,278,129	3,299,490

NZ_CP013238.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RRE-containing	213,605	233,955
Region 3.2	NRPS,T1PKS,NRPS-like	358,308	419,728	equibactin	NRP	28%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	cyclic-lactone-autoinducer	1,096,926	1,115,034
Region 1.2	cyclic-lactone-autoinducer	1,394,397	1,412,867
Region 1.3	lassopeptide	2,873,266	2,899,382
Region 1.4	cyclic-lactone-autoinducer	2,940,612	2,961,148
Region 1.5	ranthipeptide	3,278,129	3,299,490
Region 3.1	RRE-containing	213,605	233,955
Region 3.2	NRPS,T1PKS,NRPS-like	358,308	419,728	equibactin	NRP	28%

No secondary metabolite regions were found in these records:: NZ_CP013240.1

Compact view

NZ_CP013239.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1,096,926 - 1,115,034 nt. (total: 18,109 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.23	RiPP	circularin A	Clostridium beijerinckii
BGC0000502.1	0.20	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000500.1	0.19	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.19	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000560.1	0.18	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.18	RiPP	pep5	Staphylococcus epidermidis
BGC0001526.1	0.17	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001579.1	0.16	RiPP	duramycin	Streptomyces cinnamoneus
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.56	RiPP	circularin A	Clostridium beijerinckii
BGC0000502.1	0.52	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000500.1	0.52	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.52	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000560.1	0.50	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.50	RiPP	pep5	Staphylococcus epidermidis
BGC0001526.1	0.48	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001579.1	0.47	RiPP	duramycin	Streptomyces cinnamoneus
BGC0001407.1	0.47	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000626.1	0.47	RiPP	thuricin	Bacillus thuringiensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP013239.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 1,394,397 - 1,412,867 nt. (total: 18,471 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001914.1	0.16	Other	benzastatin J, 7-hydroxyl benzastatin B, 7-hydroxyl O-demethylbenzastatin A, JBIR-67, 7-hydroxyl benzastatin F, 7-hydroxyl O-demethylbenzastatin D, O-demethylvirantmycin, 7-hydroxyl benzastatin D, virantmycin, benzastatin K, methylbenzastatin K	Streptomyces sp. RI18
BGC0001529.1	0.16	Alkaloid	bezastatin derivates	Streptomyces sp. RI18
BGC0002031.1	0.15	Alkaloid	kitasetaline	Kitasatospora setae KM-6054
BGC0001586.1	0.15	Saccharide	EPS273	Pseudomonas stutzeri
BGC0000922.1	0.13	Other	pseudomonas quinolone signal (PQS)	Pseudomonas aeruginosa PAO1
BGC0000110.1	0.09	Polyketide	spectinabilin, orinocin, SNF4435C, SNF4435D	Streptomyces orinoci
BGC0000024.1	0.09	Polyketide	aureothin	Streptomyces thioluteus
BGC0001437.1	0.08	NRP	obafluorin	Pseudomonas fluorescens
BGC0001710.1	0.08	NRP	obafluorin	Pseudomonas fluorescens
BGC0001686.1	0.08	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001914.1	0.47	Other	benzastatin J, 7-hydroxyl benzastatin B, 7-hydroxyl O-demethylbenzastatin A, JBIR-67, 7-hydroxyl benzastatin F, 7-hydroxyl O-demethylbenzastatin D, O-demethylvirantmycin, 7-hydroxyl benzastatin D, virantmycin, benzastatin K, methylbenzastatin K	Streptomyces sp. RI18
BGC0001529.1	0.47	Alkaloid	bezastatin derivates	Streptomyces sp. RI18
BGC0002031.1	0.45	Alkaloid	kitasetaline	Kitasatospora setae KM-6054
BGC0001586.1	0.45	Saccharide	EPS273	Pseudomonas stutzeri
BGC0000922.1	0.42	Other	pseudomonas quinolone signal (PQS)	Pseudomonas aeruginosa PAO1
BGC0000110.1	0.33	Polyketide	spectinabilin, orinocin, SNF4435C, SNF4435D	Streptomyces orinoci
BGC0000024.1	0.33	Polyketide	aureothin	Streptomyces thioluteus
BGC0001437.1	0.31	NRP	obafluorin	Pseudomonas fluorescens
BGC0001710.1	0.31	NRP	obafluorin	Pseudomonas fluorescens
BGC0001686.1	0.31	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP013239.1 - Region 3 - lassopeptide

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Location: 2,873,266 - 2,899,382 nt. (total: 26,117 nt) Show pHMM detection rules used

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Lasso peptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000571.1	0.25	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001494.1	0.23	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0000796.1	0.21	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000578.1	0.20	RiPP	SRO15-2005	Streptomyces filamentosus NRRL 15998
BGC0000504.1	0.19	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001407.1	0.19	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000543.1	0.18	RiPP	pep5	Staphylococcus epidermidis
BGC0001356.1	0.18	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000509.1	0.17	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0001229.1	0.17	RiPP	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000571.1	0.59	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001494.1	0.57	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0000796.1	0.54	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000578.1	0.52	RiPP	SRO15-2005	Streptomyces filamentosus NRRL 15998
BGC0000504.1	0.51	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001407.1	0.51	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000543.1	0.49	RiPP	pep5	Staphylococcus epidermidis
BGC0001356.1	0.49	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000509.1	0.49	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0001229.1	0.48	RiPP	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1

Similar known gene clusters

No matches found.

Lasso peptide predictions

Lassopeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lasso peptides

Core peptide predictions

No core peptides found.

NZ_CP013239.1 - Region 4 - cyclic-lactone-autoinducer

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Location: 2,940,612 - 2,961,148 nt. (total: 20,537 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP013239.1 - Region 5 - ranthipeptide

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Location: 3,278,129 - 3,299,490 nt. (total: 21,362 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000548.1	0.17	RiPP	salivaricin A	Streptococcus salivarius
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000502.1	0.16	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000516.1	0.16	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000561.1	0.16	RiPP	thermophilin 1277	Streptococcus thermophilus
BGC0000498.1	0.16	RiPP	bovicin HJ50	Streptococcus equinus
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis
BGC0000504.1	0.15	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001210.1	0.15	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000527.1	0.15	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000548.1	0.48	RiPP	salivaricin A	Streptococcus salivarius
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000502.1	0.47	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000516.1	0.46	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000561.1	0.46	RiPP	thermophilin 1277	Streptococcus thermophilus
BGC0000498.1	0.46	RiPP	bovicin HJ50	Streptococcus equinus
BGC0000626.1	0.46	RiPP	thuricin	Bacillus thuringiensis
BGC0000504.1	0.46	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000527.1	0.46	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP013238.1 - Region 1 - RRE-containing

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Location: 213,605 - 233,955 nt. (total: 20,351 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.17	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000904.1	0.16	Other	FR-900098	Streptomyces rubellomurinus
BGC0000527.1	0.16	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000703.1	0.16	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001525.1	0.16	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001639.1	0.16	RiPP	klebsidin	Klebsiella pneumoniae
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000557.1	0.16	RiPP	streptococcin A-FF22	Streptococcus pyogenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000904.1	0.47	Other	FR-900098	Streptomyces rubellomurinus
BGC0000527.1	0.47	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000487.1	0.47	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000703.1	0.47	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001525.1	0.47	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001639.1	0.47	RiPP	klebsidin	Klebsiella pneumoniae
BGC0001526.1	0.47	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000539.1	0.47	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000557.1	0.47	RiPP	streptococcin A-FF22	Streptococcus pyogenes

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP013238.1 - Region 2 - NRPS,NRPS-like,T1PKS

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Location: 358,308 - 419,728 nt. (total: 61,421 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.98	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001527.1	0.95	Other	basidioferrin	Gelatoporia subvermispora
BGC0000375.1	0.94	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.93	Other	ferrichrome	Aspergillus oryzae
BGC0000348.1	0.93	NRP	ergovaline	Epichloe festucae var. lolii
BGC0000979.1	0.89	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.89	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0002002.1	0.85	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0001161.1	0.84	Polyketide	1-heptadecene	Moorea bouillonii PNG
BGC0001162.1	0.84	Polyketide	1-heptadecene	Moorea producens JHB

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.66	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001527.1	0.65	Other	basidioferrin	Gelatoporia subvermispora
BGC0000375.1	0.65	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.65	Other	ferrichrome	Aspergillus oryzae
BGC0000348.1	0.64	NRP	ergovaline	Epichloe festucae var. lolii
BGC0000979.1	0.63	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.63	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0002002.1	0.63	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0001161.1	0.62	Polyketide	1-heptadecene	Moorea bouillonii PNG
BGC0001162.1	0.62	Polyketide	1-heptadecene	Moorea producens JHB

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 358307 - 419728:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (X) + (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 358307 - 412825:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (X) + (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 376209 - 419728:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (X) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_393

Search NORINE for peptide: strict or relaxed

PKS_AT (562..844): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 146.9
inactive: 131.7
Methoxymalonyl-CoA: 57.3
Methylmalonyl-CoA: 50.1
Propionyl-CoA: 32.6
Isobutyryl-CoA: 27.7
Acetyl-CoA: 23.6
Benzoyl-CoA: 23.5
CHC-CoA: 15.0
Ethylmalonyl-CoA: 12.9
2-Methylbutyryl-CoA: 12.1
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

AMP-binding (1508..1895): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNiSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg3_394

Search NORINE for peptide: strict or relaxed

AMP-binding (21..480): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DLyaLAaLiK
Nearest Stachelhaus code:: iva
Stachelhaus code match:: 60% (weak)

ctg3_395

Search NORINE for peptide: strict or relaxed

AMP-binding (537..932): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLyNMSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg3_398

Search NORINE for peptide: strict or relaxed

AMP-binding (222..620): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)