GCF_019916025.1_ASM1991602v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP079737.1

Region	Type	From	To
Region 1.1	cyclic-lactone-autoinducer	1,053,561	1,072,951
Region 1.2	cyclic-lactone-autoinducer	2,697,499	2,718,283
Region 1.3	ranthipeptide	2,812,618	2,834,278

NZ_CP079738.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	ranthipeptide,cyclic-lactone-autoinducer	8	31,100

NZ_CP079740.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RRE-containing	5,407	26,300

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	1,053,561	1,072,951
Region 1.2	cyclic-lactone-autoinducer	2,697,499	2,718,283
Region 1.3	ranthipeptide	2,812,618	2,834,278
Region 2.1	ranthipeptide,cyclic-lactone-autoinducer	8	31,100
Region 4.1	RRE-containing	5,407	26,300

No secondary metabolite regions were found in these records:: NZ_CP079739.1; NZ_CP079741.1

Compact view

NZ_CP079737.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1,053,561 - 1,072,951 nt. (total: 19,391 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000527.1	0.17	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000547.1	0.16	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000928.1	0.15	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.15	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000559.1	0.14	RiPP	subtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000506.1	0.14	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000536.1	0.12	RiPP	nisin Q	Lactococcus lactis
BGC0000535.1	0.12	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0001789.1	0.12	RiPP	suicin 90-1330	Streptococcus suis
BGC0001727.1	0.12	RiPP	paenilan	Paenibacillus polymyxa E681

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000527.1	0.48	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000547.1	0.47	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000928.1	0.45	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.45	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000559.1	0.43	RiPP	subtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000506.1	0.43	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000536.1	0.40	RiPP	nisin Q	Lactococcus lactis
BGC0000535.1	0.40	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0001789.1	0.40	RiPP	suicin 90-1330	Streptococcus suis
BGC0001727.1	0.40	RiPP	paenilan	Paenibacillus polymyxa E681

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP079737.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 2,697,499 - 2,718,283 nt. (total: 20,785 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000550.1	0.14	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000883.1	0.14	Other	arginomycin	Streptomyces arginensis
BGC0001789.1	0.13	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.13	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.13	RiPP	nisin Q	Lactococcus lactis
BGC0000515.1	0.13	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000535.1	0.12	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000557.1	0.12	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000506.1	0.12	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000928.1	0.12	Other	T3 toxin	Cylindrospermopsis raciborskii T3

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000550.1	0.44	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000883.1	0.43	Other	arginomycin	Streptomyces arginensis
BGC0001789.1	0.41	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.41	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.41	RiPP	nisin Q	Lactococcus lactis
BGC0000515.1	0.41	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000535.1	0.41	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000557.1	0.40	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000506.1	0.40	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000928.1	0.40	Other	T3 toxin	Cylindrospermopsis raciborskii T3

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP079737.1 - Region 3 - ranthipeptide

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Location: 2,812,618 - 2,834,278 nt. (total: 21,661 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.18	Other	nucleocidin	Streptomyces calvus
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001120.1	0.13	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000695.1	0.10	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001591.1	0.05	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.05	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001943.1	0.05	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.05	NRP	vioprolide A	Cystobacter sp.
BGC0001704.1	0.05	Other	nocuolin A	Nodularia sp. HBU26
BGC0000027.1	0.05	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.50	Other	nucleocidin	Streptomyces calvus
BGC0000703.1	0.43	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001120.1	0.41	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000695.1	0.35	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001591.1	0.23	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.23	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001943.1	0.23	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.23	NRP	vioprolide A	Cystobacter sp.
BGC0001704.1	0.22	Other	nocuolin A	Nodularia sp. HBU26
BGC0000027.1	0.22	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP079738.1 - Region 1 - cyclic-lactone-autoinducer,ranthipeptide

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Location: 8 - 31,100 nt. (total: 31,093 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000601.1	0.45	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000585.1	0.39	RiPP	microcin C7	Escherichia coli
BGC0000599.1	0.37	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0001743.1	0.32	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0001222.1	0.32	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.32	RiPP	gassericin A	Lactobacillus gasseri
BGC0000617.1	0.31	RiPP	coagulin	Bacillus coagulans
BGC0000583.1	0.31	RiPP	grisemycin	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000494.1	0.30	RiPP	uberolysin	Streptococcus uberis
BGC0000523.1	0.29	RiPP	lactocin S	Lactobacillus sakei

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.60	RiPP	circularin A	Clostridium beijerinckii
BGC0000601.1	0.57	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000513.1	0.53	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000585.1	0.52	RiPP	microcin C7	Escherichia coli
BGC0001173.1	0.51	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.51	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0000938.1	0.50	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0001171.1	0.50	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0000540.1	0.50	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000566.1	0.50	RiPP	streptolysin S	Streptococcus pyogenes M1 GAS

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP079740.1 - Region 1 - RRE-containing

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Location: 5,407 - 26,300 nt. (total: 20,894 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001120.1	0.19	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000620.1	0.16	RiPP	lacticin Q	Lactococcus lactis
BGC0000522.1	0.16	RiPP	lacticin Z	Lactococcus lactis
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000600.1	0.16	RiPP	thurincin H	Bacillus thuringiensis
BGC0000528.1	0.15	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001655.1	0.14	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0000548.1	0.13	RiPP	salivaricin A	Streptococcus salivarius
BGC0001684.1	0.13	Other	N-acyloxyacyl glutamine	Klebsiella variicola

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001120.1	0.51	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000620.1	0.47	RiPP	lacticin Q	Lactococcus lactis
BGC0000522.1	0.47	RiPP	lacticin Z	Lactococcus lactis
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000600.1	0.46	RiPP	thurincin H	Bacillus thuringiensis
BGC0000528.1	0.46	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001655.1	0.43	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0000548.1	0.42	RiPP	salivaricin A	Streptococcus salivarius
BGC0001684.1	0.42	Other	N-acyloxyacyl glutamine	Klebsiella variicola

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names