GCF_000612845.1_AP5T_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CCAT010000042 (original name was: NZ_CCAT010000042.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	lanthipeptide-class-i	18,706	45,591

NZ_CCAT010000062 (original name was: NZ_CCAT010000062.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	NRPS	43,626	92,593
Region 49.2	RiPP-like	252,109	262,903

NZ_CCAT010000083 (original name was: NZ_CCAT010000083.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 69.1	ranthipeptide	370,126	391,694

NZ_CCAT010000085 (original name was: NZ_CCAT010000085.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 71.1	cyclic-lactone-autoinducer	52,454	73,199

Region	Type	From	To	Similarity
Region 32.1	lanthipeptide-class-i	18,706	45,591
Region 49.1	NRPS	43,626	92,593
Region 49.2	RiPP-like	252,109	262,903
Region 69.1	ranthipeptide	370,126	391,694
Region 71.1	cyclic-lactone-autoinducer	52,454	73,199

No secondary metabolite regions were found in these records:: NZ_CCAT010000001 (original name was: NZ_CCAT010000001.1); NZ_CCAT010000002 (original name was: NZ_CCAT010000002.1); NZ_CCAT010000003 (original name was: NZ_CCAT010000003.1); NZ_CCAT010000004 (original name was: NZ_CCAT010000004.1); NZ_CCAT010000005 (original name was: NZ_CCAT010000005.1); NZ_CCAT010000006 (original name was: NZ_CCAT010000006.1); NZ_CCAT010000007 (original name was: NZ_CCAT010000007.1); NZ_CCAT010000008 (original name was: NZ_CCAT010000008.1); NZ_CCAT010000009 (original name was: NZ_CCAT010000009.1); NZ_CCAT010000010 (original name was: NZ_CCAT010000010.1); NZ_CCAT010000011 (original name was: NZ_CCAT010000011.1); NZ_CCAT010000012 (original name was: NZ_CCAT010000012.1); NZ_CCAT010000013 (original name was: NZ_CCAT010000013.1); NZ_CCAT010000014 (original name was: NZ_CCAT010000014.1); NZ_CCAT010000015 (original name was: NZ_CCAT010000015.1); NZ_CCAT010000016 (original name was: NZ_CCAT010000016.1); NZ_CCAT010000017 (original name was: NZ_CCAT010000017.1); NZ_CCAT010000018 (original name was: NZ_CCAT010000018.1); NZ_CCAT010000019 (original name was: NZ_CCAT010000019.1); NZ_CCAT010000020 (original name was: NZ_CCAT010000020.1); NZ_CCAT010000021 (original name was: NZ_CCAT010000021.1); NZ_CCAT010000022 (original name was: NZ_CCAT010000022.1); NZ_CCAT010000023 (original name was: NZ_CCAT010000023.1); NZ_CCAT010000024 (original name was: NZ_CCAT010000024.1); NZ_CCAT010000026 (original name was: NZ_CCAT010000026.1); NZ_CCAT010000028 (original name was: NZ_CCAT010000028.1); NZ_CCAT010000030 (original name was: NZ_CCAT010000030.1); NZ_CCAT010000031 (original name was: NZ_CCAT010000031.1); NZ_CCAT010000039 (original name was: NZ_CCAT010000039.1); NZ_CCAT010000040 (original name was: NZ_CCAT010000040.1); NZ_CCAT010000041 (original name was: NZ_CCAT010000041.1); NZ_CCAT010000043 (original name was: NZ_CCAT010000043.1); NZ_CCAT010000044 (original name was: NZ_CCAT010000044.1); NZ_CCAT010000045 (original name was: NZ_CCAT010000045.1); NZ_CCAT010000046 (original name was: NZ_CCAT010000046.1); NZ_CCAT010000047 (original name was: NZ_CCAT010000047.1); NZ_CCAT010000048 (original name was: NZ_CCAT010000048.1); NZ_CCAT010000049 (original name was: NZ_CCAT010000049.1); NZ_CCAT010000050 (original name was: NZ_CCAT010000050.1); NZ_CCAT010000051 (original name was: NZ_CCAT010000051.1); NZ_CCAT010000052 (original name was: NZ_CCAT010000052.1); NZ_CCAT010000053 (original name was: NZ_CCAT010000053.1); NZ_CCAT010000054 (original name was: NZ_CCAT010000054.1); NZ_CCAT010000056 (original name was: NZ_CCAT010000056.1); NZ_CCAT010000057 (original name was: NZ_CCAT010000057.1); NZ_CCAT010000060 (original name was: NZ_CCAT010000060.1); NZ_CCAT010000061 (original name was: NZ_CCAT010000061.1); NZ_CCAT010000063 (original name was: NZ_CCAT010000063.1); NZ_CCAT010000064 (original name was: NZ_CCAT010000064.1); NZ_CCAT010000065 (original name was: NZ_CCAT010000065.1); NZ_CCAT010000066 (original name was: NZ_CCAT010000066.1); NZ_CCAT010000067 (original name was: NZ_CCAT010000067.1); NZ_CCAT010000068 (original name was: NZ_CCAT010000068.1); NZ_CCAT010000069 (original name was: NZ_CCAT010000069.1); NZ_CCAT010000070 (original name was: NZ_CCAT010000070.1); NZ_CCAT010000071 (original name was: NZ_CCAT010000071.1); NZ_CCAT010000072 (original name was: NZ_CCAT010000072.1); NZ_CCAT010000073 (original name was: NZ_CCAT010000073.1); NZ_CCAT010000074 (original name was: NZ_CCAT010000074.1); NZ_CCAT010000075 (original name was: NZ_CCAT010000075.1); NZ_CCAT010000076 (original name was: NZ_CCAT010000076.1); NZ_CCAT010000077 (original name was: NZ_CCAT010000077.1); NZ_CCAT010000078 (original name was: NZ_CCAT010000078.1); NZ_CCAT010000079 (original name was: NZ_CCAT010000079.1); NZ_CCAT010000080 (original name was: NZ_CCAT010000080.1); NZ_CCAT010000081 (original name was: NZ_CCAT010000081.1); NZ_CCAT010000084 (original name was: NZ_CCAT010000084.1); NZ_CCAT010000086 (original name was: NZ_CCAT010000086.1); NZ_CCAT010000087 (original name was: NZ_CCAT010000087.1); NZ_CCAT010000088 (original name was: NZ_CCAT010000088.1); NZ_CCAT010000089 (original name was: NZ_CCAT010000089.1); NZ_CCAT010000090 (original name was: NZ_CCAT010000090.1); NZ_CCAT010000091 (original name was: NZ_CCAT010000091.1); NZ_CCAT010000092 (original name was: NZ_CCAT010000092.1); NZ_CCAT010000093 (original name was: NZ_CCAT010000093.1); NZ_CCAT010000094 (original name was: NZ_CCAT010000094.1); NZ_CCAT010000096 (original name was: NZ_CCAT010000096.1)

Compact view

c00032_NZ_CCAT.. - Region 1 - lanthipeptide-class-i

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Location: 18,706 - 45,591 nt. (total: 26,886 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000556.1	0.28	RiPP	streptin	Streptococcus pyogenes
BGC0000543.1	0.26	RiPP	pep5	Staphylococcus epidermidis
BGC0001289.1	0.25	RiPP	penisin	Paenibacillus ehimensis
BGC0000541.1	0.25	RiPP	paenicidin A	Paenibacillus polymyxa
BGC0000542.1	0.25	RiPP	paenicidin B	Paenibacillus terrae
BGC0000538.1	0.24	RiPP	nisin Z	Lactococcus lactis
BGC0000536.1	0.23	RiPP	nisin Q	Lactococcus lactis
BGC0000544.1	0.23	RiPP	planosporicin	Planomonospora alba
BGC0000554.1	0.22	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000530.1	0.22	RiPP	mutacin B-Ny266	Streptococcus mutans N66

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000556.1	0.61	RiPP	streptin	Streptococcus pyogenes
BGC0000543.1	0.60	RiPP	pep5	Staphylococcus epidermidis
BGC0001289.1	0.58	RiPP	penisin	Paenibacillus ehimensis
BGC0000541.1	0.58	RiPP	paenicidin A	Paenibacillus polymyxa
BGC0000542.1	0.58	RiPP	paenicidin B	Paenibacillus terrae
BGC0000538.1	0.57	RiPP	nisin Z	Lactococcus lactis
BGC0000536.1	0.57	RiPP	nisin Q	Lactococcus lactis
BGC0000544.1	0.56	RiPP	planosporicin	Planomonospora alba
BGC0000554.1	0.54	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000530.1	0.54	RiPP	mutacin B-Ny266	Streptococcus mutans N66

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg32_32 - Putative Class I

ctg32_19 leader / core peptide: MPNYKDFDLDLQNNKLSKKYESV - NRGNKDhbYNRDCGYKDhbHEPDDhaCGNDhaCFDhbDhaAKCDWA
ctg32_20 leader / core peptide: MPNYKEFDLDIRNEKNNLKSMN - DhaKKRDhaDGGDhbCYYDhaCGCKDhbNEGNDhaCGKVCFDhbDDhbIVCGDhbDFDGR
ctg32_22 leader / core peptide: MPNYKDFDLDIQNIKMNKINDKR - RYPIDhaDKRDDMDhaMCVCKKDhbDVCKDhbHEDhbDDhaCNNGLCFEDhaGKCDhbWV
ctg32_23 leader / core peptide: MPNYKDFDLDIQNSKLGVDSSR - KVLPPDhbFDhaYEYDKLDhaECRCRPKDhbQDhbCADhbHCDhaCADhbYCNGDhaCNQHDhbDCAL
ctg32_24 leader / core peptide: MPNYKEFDLDIRNSKNGINMY - GPDhaAVIVPADhbDGGGKKDhbVCGRDhbCNGDhaACNPNDhaCQDhbRCIKPAD
ctg32_25 leader / core peptide: MPNYKDFDLDIQNNKSSVNSIKTTTM - PPDhbFDhaYEYDQYDhaECVCKPKDhbRNDhaCVDhbYCNGDhaCNQHDhbDCDhbL
ctg32_26 leader / core peptide: MPNYKDFDLDLRNNTVKGNNSKNENI - QGKKKDhbDGCYDhbYGNRDhaCPNDhbMCAY
ctg32_27 leader / core peptide: MPNYKDFDLDIQNNKGSSKTSLGKE - LDhaNDhbGNYYDPLDhaECRCKPKDhbYDhbKRLKDhbCNVKECMY
ctg32_30 leader / core peptide: MPNYKDFDLDLTNKKVITNEIKDKTIQAN - IARDhbYGPVKDhaCQYICRLDhaENIEDCQ

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lanthipeptides

Core peptide predictions

ctg32_19 - Class I

Cleavage pHMM score: -4.10

RODEO score: 20

Monoisotopic mass: 3719.6 Da

Molecular weight: 3722.0 Da

Number of bridges: 4

Alternative weights: (assuming N unmodified Ser/Thr residues); 3740.0 Da N = 1; 3758.0 Da N = 2

ctg32_20 - Class I

Cleavage pHMM score: -4.40

RODEO score: 21

Monoisotopic mass: 4299.9 Da

Molecular weight: 4302.7 Da

Number of bridges: 6

Alternative weights: (assuming N unmodified Ser/Thr residues); 4320.7 Da N = 1; 4338.8 Da N = 2; 4356.8 Da N = 3

ctg32_22 - Class I

Cleavage pHMM score: -2.10

RODEO score: 20

Monoisotopic mass: 4888.2 Da

Molecular weight: 4891.6 Da

Number of bridges: 6

Alternative weights: (assuming N unmodified Ser/Thr residues); 4909.6 Da N = 1; 4927.6 Da N = 2

ctg32_23 - Class I

Cleavage pHMM score: -5.50

RODEO score: 22

Monoisotopic mass: 5195.3 Da

Molecular weight: 5198.9 Da

Number of bridges: 8

Alternative weights: (assuming N unmodified Ser/Thr residues); 5216.9 Da N = 1; 5234.9 Da N = 2

ctg32_24 - Class I

Cleavage pHMM score: -4.00

RODEO score: 19

Monoisotopic mass: 4006.9 Da

Molecular weight: 4009.5 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 4027.5 Da N = 1; 4045.6 Da N = 2

ctg32_25 - Class I

Cleavage pHMM score: 2.90

RODEO score: 21

Monoisotopic mass: 4421.9 Da

Molecular weight: 4424.8 Da

Number of bridges: 6

Alternative weights: (assuming N unmodified Ser/Thr residues); 4442.9 Da N = 1; 4460.9 Da N = 2; 4478.9 Da N = 3

ctg32_26 - Class I

Cleavage pHMM score: 5.20

RODEO score: 15

Monoisotopic mass: 2616.2 Da

Molecular weight: 2617.9 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2636.0 Da N = 1

ctg32_27 - Class I

Cleavage pHMM score: -3.00

RODEO score: 16

Monoisotopic mass: 4041.0 Da

Molecular weight: 4043.7 Da

Number of bridges: 4

Alternative weights: (assuming N unmodified Ser/Thr residues); 4061.7 Da N = 1; 4079.7 Da N = 2

ctg32_30 - Class I

Cleavage pHMM score: 2.90

RODEO score: 20

Monoisotopic mass: 2834.4 Da

Molecular weight: 2836.2 Da

Number of bridges: 3

c00049_NZ_CCAT.. - Region 1 - NRPS

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Location: 43,626 - 92,593 nt. (total: 48,968 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000412.1	0.28	NRP	pyochelin	Pseudomonas aeruginosa PAO1
BGC0000373.1	0.27	NRP	holomycin	Streptomyces clavuligerus ATCC 27064
BGC0000347.1	0.22	NRP	equibactin	Streptococcus equi subsp. equi
BGC0001444.1	0.22	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001538.1	0.22	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0000352.1	0.22	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0001469.1	0.22	NRP	marthiapeptide A	Brevibacillus sp. Leaf182
BGC0001128.1	0.21	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000426.1	0.21	NRP	sevadicin	Paenibacillus larvae
BGC0001343.1	0.21	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000412.1	0.61	NRP	pyochelin	Pseudomonas aeruginosa PAO1
BGC0000373.1	0.60	NRP	holomycin	Streptomyces clavuligerus ATCC 27064
BGC0000347.1	0.55	NRP	equibactin	Streptococcus equi subsp. equi
BGC0001444.1	0.55	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001538.1	0.55	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0000352.1	0.55	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0001469.1	0.55	NRP	marthiapeptide A	Brevibacillus sp. Leaf182
BGC0001128.1	0.54	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000426.1	0.54	NRP	sevadicin	Paenibacillus larvae
BGC0001343.1	0.54	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 43625 - 92593:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (Me-cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg49_61

Search NORINE for peptide: strict or relaxed

AMP-binding (32..419): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gLPAtGqsiK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 50% (weak)

ctg49_62

Search NORINE for peptide: strict or relaxed

AMP-binding (547..943): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNlSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg49_63

Search NORINE for peptide: strict or relaxed

AMP-binding (528..923): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNlSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

c00049_NZ_CCAT.. - Region 2 - RiPP-like

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Location: 252,109 - 262,903 nt. (total: 10,795 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	RiPP-like	Similarity score	Type	Compound(s)	Organism
BGC0001131.1		0.08	NRP	ambactin	Xenorhabdus miraniensis

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0001131.1		0.31	NRP	ambactin	Xenorhabdus miraniensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00069_NZ_CCAT.. - Region 1 - ranthipeptide

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Location: 370,126 - 391,694 nt. (total: 21,569 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.17	Other	nucleocidin	Streptomyces calvus
BGC0001540.1	0.14	Other	CC-1065	Streptomyces zelensis
BGC0000466.1	0.13	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0000695.1	0.11	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000604.1	0.09	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.08	RiPP	GE2270	Planobispora rosea
BGC0001591.1	0.07	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.07	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000027.1	0.06	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus
BGC0001603.1	0.05	Saccharide	gentamicin	Micromonospora echinospora

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.48	Other	nucleocidin	Streptomyces calvus
BGC0001540.1	0.43	Other	CC-1065	Streptomyces zelensis
BGC0000466.1	0.42	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0000695.1	0.37	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000604.1	0.33	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.32	RiPP	GE2270	Planobispora rosea
BGC0001591.1	0.28	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.28	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000027.1	0.26	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus
BGC0001603.1	0.22	Saccharide	gentamicin	Micromonospora echinospora

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00071_NZ_CCAT.. - Region 1 - cyclic-lactone-autoinducer

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Location: 52,454 - 73,199 nt. (total: 20,746 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000550.1	0.15	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000928.1	0.15	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.15	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000559.1	0.13	RiPP	subtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001789.1	0.13	RiPP	suicin 90-1330	Streptococcus suis
BGC0000535.1	0.13	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000537.1	0.13	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.12	RiPP	nisin Q	Lactococcus lactis
BGC0000557.1	0.12	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000506.1	0.12	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000550.1	0.45	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000928.1	0.45	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.45	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000559.1	0.41	RiPP	subtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001789.1	0.41	RiPP	suicin 90-1330	Streptococcus suis
BGC0000535.1	0.41	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000537.1	0.41	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.41	RiPP	nisin Q	Lactococcus lactis
BGC0000557.1	0.40	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000506.1	0.40	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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