Select genomic region:
Overview
29.1
36.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CCYH01000029 (original name was: NZ_CCYH01000029.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 29.1 | cyclic-lactone-autoinducer | 248,544 | 269,314 |

NZ_CCYH01000036 (original name was: NZ_CCYH01000036.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 36.1 | ranthipeptide | 189,983 | 203,691 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 29.1 | cyclic-lactone-autoinducer | 248,544 | 269,314 |
Region 36.1 | ranthipeptide | 189,983 | 203,691 |

No secondary metabolite regions were found in these records:
  NZ_CCYH01000001 (original name was: NZ_CCYH01000001.1)
  NZ_CCYH01000002 (original name was: NZ_CCYH01000002.1)
  NZ_CCYH01000003 (original name was: NZ_CCYH01000003.1)
  NZ_CCYH01000004 (original name was: NZ_CCYH01000004.1)
  NZ_CCYH01000005 (original name was: NZ_CCYH01000005.1)
  NZ_CCYH01000006 (original name was: NZ_CCYH01000006.1)
  NZ_CCYH01000007 (original name was: NZ_CCYH01000007.1)
  NZ_CCYH01000008 (original name was: NZ_CCYH01000008.1)
  NZ_CCYH01000009 (original name was: NZ_CCYH01000009.1)
  NZ_CCYH01000010 (original name was: NZ_CCYH01000010.1)
  NZ_CCYH01000011 (original name was: NZ_CCYH01000011.1)
  NZ_CCYH01000012 (original name was: NZ_CCYH01000012.1)
  NZ_CCYH01000013 (original name was: NZ_CCYH01000013.1)
  NZ_CCYH01000014 (original name was: NZ_CCYH01000014.1)
  NZ_CCYH01000015 (original name was: NZ_CCYH01000015.1)
  NZ_CCYH01000016 (original name was: NZ_CCYH01000016.1)
  NZ_CCYH01000017 (original name was: NZ_CCYH01000017.1)
  NZ_CCYH01000018 (original name was: NZ_CCYH01000018.1)
  NZ_CCYH01000019 (original name was: NZ_CCYH01000019.1)
  NZ_CCYH01000020 (original name was: NZ_CCYH01000020.1)
  NZ_CCYH01000021 (original name was: NZ_CCYH01000021.1)
  NZ_CCYH01000022 (original name was: NZ_CCYH01000022.1)
  NZ_CCYH01000023 (original name was: NZ_CCYH01000023.1)
  NZ_CCYH01000024 (original name was: NZ_CCYH01000024.1)
  NZ_CCYH01000025 (original name was: NZ_CCYH01000025.1)
  NZ_CCYH01000026 (original name was: NZ_CCYH01000026.1)
  NZ_CCYH01000027 (original name was: NZ_CCYH01000027.1)
  NZ_CCYH01000028 (original name was: NZ_CCYH01000028.1)
  NZ_CCYH01000030 (original name was: NZ_CCYH01000030.1)
  NZ_CCYH01000031 (original name was: NZ_CCYH01000031.1)
  NZ_CCYH01000032 (original name was: NZ_CCYH01000032.1)
  NZ_CCYH01000033 (original name was: NZ_CCYH01000033.1)
  NZ_CCYH01000034 (original name was: NZ_CCYH01000034.1)
  NZ_CCYH01000035 (original name was: NZ_CCYH01000035.1)
  NZ_CCYH01000037 (original name was: NZ_CCYH01000037.1)
  NZ_CCYH01000038 (original name was: NZ_CCYH01000038.1)
  NZ_CCYH01000039 (original name was: NZ_CCYH01000039.1)
  NZ_CCYH01000040 (original name was: NZ_CCYH01000040.1)
  NZ_CCYH01000041 (original name was: NZ_CCYH01000041.1)
  NZ_CCYH01000042 (original name was: NZ_CCYH01000042.1)
  NZ_CCYH01000043 (original name was: NZ_CCYH01000043.1)
  NZ_CCYH01000044 (original name was: NZ_CCYH01000044.1)
  NZ_CCYH01000045 (original name was: NZ_CCYH01000045.1)
  NZ_CCYH01000046 (original name was: NZ_CCYH01000046.1)
  NZ_CCYH01000047 (original name was: NZ_CCYH01000047.1)
  NZ_CCYH01000048 (original name was: NZ_CCYH01000048.1)
  NZ_CCYH01000049 (original name was: NZ_CCYH01000049.1)
  NZ_CCYH01000050 (original name was: NZ_CCYH01000050.1)
  NZ_CCYH01000051 (original name was: NZ_CCYH01000051.1)

Compact view
c00029_NZ_CCYH.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 248,544 - 269,314 nt. (total: 20,771 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000207.1 |  | 0.15 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0000877.1 |  | 0.09 | Other | polyoxin A, polyoxin H | Streptomyces cacaoi subsp. asoensis
BGC0000259.1 |  | 0.09 | Polyketide | prodigiosin | Serratia marcescens
BGC0000813.1 |  | 0.07 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000969.1 |  | 0.07 | NRP, Polyketide | chondramide A | Chondromyces crocatus
BGC0001212.1 |  | 0.06 | NRP, Polyketide | nannocystin a | Nannocystis sp. MB1016
BGC0000283.1 |  | 0.05 | Other (Cyclitol) | cetoniacytone A | Actinomyces sp. Lu 9419
BGC0001110.1 |  | 0.05 | NRP, Polyketide | psymberin, irciniastatin B | uncultured bacterium psy1
BGC0000814.1 |  | 0.05 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001662.1 |  | 0.05 | Polyketide | mediomycin A | Kitasatospora mediocidica

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000207.1 |  | 0.45 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0000877.1 |  | 0.34 | Other | polyoxin A, polyoxin H | Streptomyces cacaoi subsp. asoensis
BGC0000259.1 |  | 0.34 | Polyketide | prodigiosin | Serratia marcescens
BGC0000813.1 |  | 0.29 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000969.1 |  | 0.28 | NRP, Polyketide | chondramide A | Chondromyces crocatus
BGC0001212.1 |  | 0.25 | NRP, Polyketide | nannocystin a | Nannocystis sp. MB1016
BGC0000283.1 |  | 0.23 | Other (Cyclitol) | cetoniacytone A | Actinomyces sp. Lu 9419
BGC0001110.1 |  | 0.22 | NRP, Polyketide | psymberin, irciniastatin B | uncultured bacterium psy1
BGC0000814.1 |  | 0.22 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001662.1 |  | 0.22 | Polyketide | mediomycin A | Kitasatospora mediocidica

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00036_NZ_CCYH.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 189,983 - 203,691 nt. (total: 13,709 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000599.1 |  | 0.15 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001765.1 |  | 0.13 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.13 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0000695.1 |  | 0.10 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0002026.1 |  | 0.09 | NRP | thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2 | Jahnella sp. MSr9139
BGC0002007.1 |  | 0.06 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0000997.1 |  | 0.05 | NRP, Polyketide | glidobactin | [Polyangium] brachysporum
BGC0000344.1 |  | 0.05 | NRP | entolysin | Pseudomonas entomophila L48
BGC0000080.1 |  | 0.04 | Polyketide | jerangolid A, jerangolid D | Sorangium cellulosum
BGC0001603.1 |  | 0.04 | Saccharide | gentamicin | Micromonospora echinospora

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000599.1 |  | 0.46 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001765.1 |  | 0.41 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.41 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0000695.1 |  | 0.34 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0002026.1 |  | 0.32 | NRP | thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2 | Jahnella sp. MSr9139
BGC0002007.1 |  | 0.25 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0000997.1 |  | 0.24 | NRP, Polyketide | glidobactin | [Polyangium] brachysporum
BGC0000344.1 |  | 0.21 | NRP | entolysin | Pseudomonas entomophila L48
BGC0000080.1 |  | 0.21 | Polyketide | jerangolid A, jerangolid D | Sorangium cellulosum
BGC0001603.1 |  | 0.19 | Saccharide | gentamicin | Micromonospora echinospora

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names