Select genomic region:
Overview
1.1
2.1
2.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_HE610958.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 452,921 | 494,192 |

NZ_HE610957.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | ectoine | 638,144 | 648,524 | ectoine | Other | 50%
Region 2.2 | terpene | 799,161 | 819,979 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 452,921 | 494,192 |
Region 2.1 | ectoine | 638,144 | 648,524 | ectoine | Other | 50%
Region 2.2 | terpene | 799,161 | 819,979 |

No secondary metabolite regions were found in these records:
  NZ_HE610959.1
  NZ_HE610960.1
  NZ_HE610961.1
  NZ_HE610962.1
  NZ_HE610963.1
  NZ_HE610964.1
  NZ_HE610965.1
  NZ_HE610966.1
  NZ_HE610967.1
  NZ_HE610968.1
  NZ_HE610969.1
  NZ_HE610970.1
  NZ_HE610971.1
  NZ_HE610972.1
  NZ_HE610973.1
  NZ_HE610974.1
  NZ_CAES01000134 (original name was: NZ_CAES01000134.1)
  NZ_CAES01000133 (original name was: NZ_CAES01000133.1)
  NZ_CAES01000132 (original name was: NZ_CAES01000132.1)
  NZ_CAES01000131 (original name was: NZ_CAES01000131.1)
  NZ_CAES01000130 (original name was: NZ_CAES01000130.1)
  NZ_CAES01000129 (original name was: NZ_CAES01000129.1)
  NZ_CAES01000128 (original name was: NZ_CAES01000128.1)
  NZ_CAES01000127 (original name was: NZ_CAES01000127.1)
  NZ_CAES01000126 (original name was: NZ_CAES01000126.1)
  NZ_CAES01000125 (original name was: NZ_CAES01000125.1)
  NZ_CAES01000124 (original name was: NZ_CAES01000124.1)
  NZ_CAES01000123 (original name was: NZ_CAES01000123.1)
  NZ_CAES01000122 (original name was: NZ_CAES01000122.1)
  NZ_CAES01000121 (original name was: NZ_CAES01000121.1)
  NZ_CAES01000120 (original name was: NZ_CAES01000120.1)

Compact view
NZ_HE610958.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 452,921 - 494,192 nt. (total: 41,272 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001962.1 |  | 0.34 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001938.1 |  | 0.34 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001831.1 |  | 0.23 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000703.1 |  | 0.14 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000010.1 |  | 0.13 | Polyketide | aflatoxin | Aspergillus flavus
BGC0001335.1 |  | 0.13 | Alkaloid | borregomycin A, borregomycin B, borregomycin C, borregomycin D | uncultured bacterium
BGC0000679.1 |  | 0.13 | Terpene | diazepinomicin | Micromonospora sp. M42
BGC0001964.1 |  | 0.12 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Cystobacterineae bacterium
BGC0001848.1 |  | 0.12 | Other | diazaquinomycin H, diazaquinomycin J | Micromonospora sp. B006
BGC0000865.1 |  | 0.11 | Other | eicoseicosapentaenoic acid | Photobacterium profundum SS9

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001962.1 |  | 0.67 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001938.1 |  | 0.67 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001831.1 |  | 0.56 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000703.1 |  | 0.43 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000010.1 |  | 0.42 | Polyketide | aflatoxin | Aspergillus flavus
BGC0001335.1 |  | 0.41 | Alkaloid | borregomycin A, borregomycin B, borregomycin C, borregomycin D | uncultured bacterium
BGC0000679.1 |  | 0.41 | Terpene | diazepinomicin | Micromonospora sp. M42
BGC0001964.1 |  | 0.41 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Cystobacterineae bacterium
BGC0001848.1 |  | 0.40 | Other | diazaquinomycin H, diazaquinomycin J | Micromonospora sp. B006
BGC0000865.1 |  | 0.38 | Other | eicoseicosapentaenoic acid | Photobacterium profundum SS9

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE610957.1 - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 638,144 - 648,524 nt. (total: 10,381 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000858.1 |  | 0.41 | Other | ectoine | Methylobacter marinus
BGC0000855.1 |  | 0.40 | Other | ectoine | Methylomicrobium kenyense
BGC0000856.1 |  | 0.40 | Other | ectoine | Methylophaga thalassica
BGC0000859.1 |  | 0.40 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000852.1 |  | 0.38 | Other | ectoine | Sporosarcina pasteurii
BGC0000857.1 |  | 0.30 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.28 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000853.1 |  | 0.27 | Other | ectoine | Streptomyces anulatus
BGC0000860.1 |  | 0.25 | Other | ectoine | Methylarcula marina
BGC0000487.1 |  | 0.17 | RiPP | carnocyclin | Carnobacterium maltaromaticum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000858.1 |  | 0.72 | Other | ectoine | Methylobacter marinus
BGC0000855.1 |  | 0.72 | Other | ectoine | Methylomicrobium kenyense
BGC0000856.1 |  | 0.72 | Other | ectoine | Methylophaga thalassica
BGC0000859.1 |  | 0.72 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000852.1 |  | 0.71 | Other | ectoine | Sporosarcina pasteurii
BGC0000857.1 |  | 0.64 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.62 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000853.1 |  | 0.60 | Other | ectoine | Streptomyces anulatus
BGC0000860.1 |  | 0.59 | Other | ectoine | Methylarcula marina
BGC0000487.1 |  | 0.48 | RiPP | carnocyclin | Carnobacterium maltaromaticum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE610957.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 799,161 - 819,979 nt. (total: 20,819 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001156.1 |  | 0.19 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.19 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0001898.1 |  | 0.05 | Terpene | thioplatensimycin, thioplatencin | Streptomyces platensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001156.1 |  | 0.51 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.51 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0001898.1 |  | 0.21 | Terpene | thioplatensimycin, thioplatencin | Streptomyces platensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names