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Overview
1.1
1.2
2.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_HE978636.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 927,852 | 954,450 |
Region 1.2 | siderophore | 983,710 | 995,488 | desferrioxamine | Other | 66%

NZ_HE978637.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | terpene | 764,645 | 785,529 | carotenoid | Terpene | 50%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 927,852 | 954,450 |
Region 1.2 | siderophore | 983,710 | 995,488 | desferrioxamine | Other | 66%
Region 2.1 | terpene | 764,645 | 785,529 | carotenoid | Terpene | 50%

No secondary metabolite regions were found in these records:
  NZ_HE978638.1
  NZ_HE978639.1
  NZ_HE978640.1

Compact view
NZ_HE978636.1 - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 927,852 - 954,450 nt. (total: 26,599 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000703.1 |  | 0.24 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000649.1 |  | 0.20 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000234.1 |  | 0.19 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000243.1 |  | 0.18 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000249.1 |  | 0.18 | Polyketide | nogalamycin | Streptomyces nogalater
BGC0001137.1 |  | 0.17 | Alkaloid | marinacarboline A, marinacarboline B, marinacarboline C, marinacarboline D | Marinactinospora thermotolerans
BGC0000706.1 |  | 0.17 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000648.1 |  | 0.16 | Terpene | carotenoid | Myxococcus xanthus
BGC0001521.1 |  | 0.15 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000805.1 |  | 0.15 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000703.1 |  | 0.57 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000649.1 |  | 0.52 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000234.1 |  | 0.51 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000243.1 |  | 0.49 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000249.1 |  | 0.49 | Polyketide | nogalamycin | Streptomyces nogalater
BGC0001137.1 |  | 0.49 | Alkaloid | marinacarboline A, marinacarboline B, marinacarboline C, marinacarboline D | Marinactinospora thermotolerans
BGC0000706.1 |  | 0.48 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000648.1 |  | 0.47 | Terpene | carotenoid | Myxococcus xanthus
BGC0001521.1 |  | 0.45 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000805.1 |  | 0.45 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE978636.1 - Region 2 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 983,710 - 995,488 nt. (total: 11,779 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.53 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.44 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  | 0.36 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  | 0.36 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001572.1 |  | 0.33 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001531.1 |  | 0.21 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0001499.1 |  | 0.17 | Other | aerobactin | Pantoea ananatis
BGC0000244.1 |  | 0.17 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001713.1 |  | 0.16 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001607.1 |  | 0.16 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.80 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.75 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  | 0.69 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  | 0.69 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001572.1 |  | 0.66 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001531.1 |  | 0.53 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0001499.1 |  | 0.49 | Other | aerobactin | Pantoea ananatis
BGC0000244.1 |  | 0.47 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001713.1 |  | 0.47 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001607.1 |  | 0.46 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE978637.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 764,645 - 785,529 nt. (total: 20,885 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.29 | Terpene | carotenoid | Myxococcus xanthus
BGC0000644.1 |  | 0.23 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000650.1 |  | 0.22 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000645.1 |  | 0.22 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000640.1 |  | 0.20 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000664.1 |  | 0.18 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1 |  | 0.18 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000637.1 |  | 0.17 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0001227.1 |  | 0.16 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000768.1 |  | 0.16 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.63 | Terpene | carotenoid | Myxococcus xanthus
BGC0000644.1 |  | 0.56 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000650.1 |  | 0.55 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000645.1 |  | 0.55 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000640.1 |  | 0.52 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000664.1 |  | 0.49 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1 |  | 0.49 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000637.1 |  | 0.48 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0001227.1 |  | 0.47 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000768.1 |  | 0.47 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names