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Overview
1.1
1.2
1.3
1.4
2.1
2.2
2.3

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CCDP010000001 (original name was: NZ_CCDP010000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 1,077,272 | 1,109,028 |
Region 1.2 | terpene | 1,479,980 | 1,501,866 |
Region 1.3 | NRPS | 1,713,852 | 1,760,985 | bacillibactin | NRP | 46%
Region 1.4 | T3PKS | 2,160,433 | 2,201,521 |

NZ_CCDP010000002 (original name was: NZ_CCDP010000002.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | ectoine | 72,328 | 82,714 | ectoine | Other | 100%
Region 2.2 | T3PKS | 91,702 | 132,877 |
Region 2.3 | terpene | 728,029 | 748,850 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 1,077,272 | 1,109,028 |
Region 1.2 | terpene | 1,479,980 | 1,501,866 |
Region 1.3 | NRPS | 1,713,852 | 1,760,985 | bacillibactin | NRP | 46%
Region 1.4 | T3PKS | 2,160,433 | 2,201,521 |
Region 2.1 | ectoine | 72,328 | 82,714 | ectoine | Other | 100%
Region 2.2 | T3PKS | 91,702 | 132,877 |
Region 2.3 | terpene | 728,029 | 748,850 |

No secondary metabolite regions were found in these records:
  NZ_CCDP010000003 (original name was: NZ_CCDP010000003.1)
  NZ_CCDP010000004 (original name was: NZ_CCDP010000004.1)
  NZ_CCDP010000005 (original name was: NZ_CCDP010000005.1)
  NZ_CCDP010000006 (original name was: NZ_CCDP010000006.1)
  NZ_CCDP010000007 (original name was: NZ_CCDP010000007.1)

Compact view
c00001_NZ_CCDP.. - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,077,272 - 1,109,028 nt. (total: 31,757 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000258.1 |  | 0.20 | Polyketide | prodigiosin | Serratia sp.
BGC0000259.1 |  | 0.20 | Polyketide | prodigiosin | Serratia marcescens
BGC0001465.1 |  | 0.19 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000891.1 |  | 0.19 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.19 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000260.1 |  | 0.18 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0001897.1 |  | 0.18 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000343.1 |  | 0.17 | NRP | enterobactin | Pseudomonas sp. J465
BGC0001589.1 |  | 0.16 | Saccharide | exopolysaccharides | Burkholderia cenocepacia J2315
BGC0001588.1 |  | 0.16 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000258.1 |  | 0.52 | Polyketide | prodigiosin | Serratia sp.
BGC0000259.1 |  | 0.52 | Polyketide | prodigiosin | Serratia marcescens
BGC0001465.1 |  | 0.52 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000891.1 |  | 0.51 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.51 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000260.1 |  | 0.50 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0001897.1 |  | 0.50 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000343.1 |  | 0.48 | NRP | enterobactin | Pseudomonas sp. J465
BGC0001589.1 |  | 0.47 | Saccharide | exopolysaccharides | Burkholderia cenocepacia J2315
BGC0001588.1 |  | 0.46 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_CCDP.. - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,479,980 - 1,501,866 nt. (total: 21,887 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001514.1 |  | 0.17 | Other | aristeromycin | Streptomyces citricolor
BGC0000703.1 |  | 0.16 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001374.1 |  | 0.15 | Other | thienodolin | Streptomyces albogriseolus
BGC0000874.1 |  | 0.15 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000903.1 |  | 0.14 | Other | fluorometabolite | Streptomyces cattleya
BGC0001914.1 |  | 0.14 | Other | benzastatin J, 7-hydroxyl benzastatin B, 7-hydroxyl O-demethylbenzastatin A, JBIR-67, 7-hydroxyl benzastatin F, 7-hydroxyl O-demethylbenzastatin D, O-demethylvirantmycin, 7-hydroxyl benzastatin D, virantmycin, benzastatin K, methylbenzastatin K | Streptomyces sp. RI18
BGC0001529.1 |  | 0.14 | Alkaloid | bezastatin derivates | Streptomyces sp. RI18
BGC0001810.1 |  | 0.13 | Polyketide | trehangelin | Polymorphospora rubra
BGC0000528.1 |  | 0.13 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000670.1 |  | 0.13 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001514.1 |  | 0.48 | Other | aristeromycin | Streptomyces citricolor
BGC0000703.1 |  | 0.47 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001374.1 |  | 0.45 | Other | thienodolin | Streptomyces albogriseolus
BGC0000874.1 |  | 0.44 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000903.1 |  | 0.44 | Other | fluorometabolite | Streptomyces cattleya
BGC0001914.1 |  | 0.42 | Other | benzastatin J, 7-hydroxyl benzastatin B, 7-hydroxyl O-demethylbenzastatin A, JBIR-67, 7-hydroxyl benzastatin F, 7-hydroxyl O-demethylbenzastatin D, O-demethylvirantmycin, 7-hydroxyl benzastatin D, virantmycin, benzastatin K, methylbenzastatin K | Streptomyces sp. RI18
BGC0001529.1 |  | 0.42 | Alkaloid | bezastatin derivates | Streptomyces sp. RI18
BGC0001810.1 |  | 0.42 | Polyketide | trehangelin | Polymorphospora rubra
BGC0000528.1 |  | 0.41 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000670.1 |  | 0.41 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_CCDP.. - Region 3 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,713,852 - 1,760,985 nt. (total: 47,134 nt) Show pHMM detection rules used
NRPS: cds(Condensation and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NRPS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001185.1 |  | 0.53 | NRP | bacillibactin | Bacillus velezensis FZB42
BGC0000401.1 |  | 0.43 | NRP | paenibactin | Paenibacillus elgii B69
BGC0001615.1 |  | 0.33 | NRP | hexose-palythine-serine, hexose-shinorine | Heteroscytonema crispum UCFS10
BGC0000309.1 |  | 0.30 | NRP | bacillibactin | Bacillus subtilis subsp. subtilis str. 168
BGC0000889.1 |  | 0.28 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0001833.1 |  | 0.27 | NRP | icosalide A, icosalide B | Burkholderia gladioli
BGC0000417.1 |  | 0.27 | NRP | rhodochelin | Rhodococcus jostii RHA1
BGC0001132.1 |  | 0.27 | NRP | xenotetrapeptide | Xenorhabdus nematophila ATCC 19061
BGC0001149.1 |  | 0.27 | NRP, Saccharide | brabantamide A | Pseudomonas sp. SHC52
BGC0001825.1 |  | 0.27 | NRP | xenematide | Xenorhabdus nematophila AN6/1

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001185.1 |  | 0.81 | NRP | bacillibactin | Bacillus velezensis FZB42
BGC0000401.1 |  | 0.74 | NRP | paenibactin | Paenibacillus elgii B69
BGC0001615.1 |  | 0.66 | NRP | hexose-palythine-serine, hexose-shinorine | Heteroscytonema crispum UCFS10
BGC0000309.1 |  | 0.63 | NRP | bacillibactin | Bacillus subtilis subsp. subtilis str. 168
BGC0000889.1 |  | 0.62 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0001833.1 |  | 0.61 | NRP | icosalide A, icosalide B | Burkholderia gladioli
BGC0000417.1 |  | 0.61 | NRP | rhodochelin | Rhodococcus jostii RHA1
BGC0001132.1 |  | 0.61 | NRP | xenotetrapeptide | Xenorhabdus nematophila ATCC 19061
BGC0001149.1 |  | 0.60 | NRP, Saccharide | brabantamide A | Pseudomonas sp. SHC52
BGC0001825.1 |  | 0.60 | NRP | xenematide | Xenorhabdus nematophila AN6/1

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 3, location 1713851 - 1760985:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (gly - thr)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg1_1611: dhb
  Search NORINE for peptide: strict or relaxed
  AMP-binding (32..437): dhb
  NRPSPredictor2: dhb
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aromatic
    Large clusters prediction:
      dhb, sal
    Small clusters prediction:
      dhb, sal
    Single AA prediction:
      dhb
  Stachelhaus prediction details:
    Stachelhaus sequence:
      PMPAQGVVNK
    Nearest Stachelhaus code:
      dhb
    Stachelhaus code match:
      100% (strong)
ctg1_1613: gly - thr
  Search NORINE for peptide: strict or relaxed
  AMP-binding (462..859): gly
  NRPSPredictor2: gly
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      gly, ala, val, leu, ile, abu, iva
    Small clusters prediction:
      gly, ala
    Single AA prediction:
      gly
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DILQLGLIWK
    Nearest Stachelhaus code:
      gly
    Stachelhaus code match:
      100% (strong)
  AMP-binding (1517..1932): thr
  NRPSPredictor2: thr
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      ser, thr, dhpg, hpg
    Small clusters prediction:
      thr
    Single AA prediction:
      thr
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DFWNIGMVHK
    Nearest Stachelhaus code:
      thr
    Stachelhaus code match:
      100% (strong)

c00001_NZ_CCDP.. - Region 4 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,160,433 - 2,201,521 nt. (total: 41,089 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.33 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.32 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001831.1 |  | 0.25 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001140.1 |  | 0.19 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0001156.1 |  | 0.19 | Terpene | platencin | Streptomyces platensis
BGC0000905.1 |  | 0.19 | Other | heme D1 | Heliobacillus mobilis
BGC0001654.1 |  | 0.15 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000906.1 |  | 0.13 | Other | heme D1 | Heliophilum fasciatum
BGC0001735.1 |  | 0.13 | Other | pentostatine, vidarabine | Streptomyces antibioticus
BGC0002034.1 |  | 0.13 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.67 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.65 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001831.1 |  | 0.59 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001140.1 |  | 0.52 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0001156.1 |  | 0.52 | Terpene | platencin | Streptomyces platensis
BGC0000905.1 |  | 0.51 | Other | heme D1 | Heliobacillus mobilis
BGC0001654.1 |  | 0.45 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000906.1 |  | 0.42 | Other | heme D1 | Heliophilum fasciatum
BGC0001735.1 |  | 0.42 | Other | pentostatine, vidarabine | Streptomyces antibioticus
BGC0002034.1 |  | 0.42 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00002_NZ_CCDP.. - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 72,328 - 82,714 nt. (total: 10,387 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000852.1 |  | 0.53 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.41 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000858.1 |  | 0.41 | Other | ectoine | Methylobacter marinus
BGC0000853.1 |  | 0.40 | Other | ectoine | Streptomyces anulatus
BGC0000856.1 |  | 0.40 | Other | ectoine | Methylophaga thalassica
BGC0000855.1 |  | 0.34 | Other | ectoine | Methylomicrobium kenyense
BGC0000857.1 |  | 0.31 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.31 | Other | ectoine | Methylarcula marina
BGC0000854.1 |  | 0.29 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000895.1 |  | 0.14 | Other | citrulline | Lactobacillus plantarum subsp. plantarum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000852.1 |  | 0.80 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.72 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000858.1 |  | 0.72 | Other | ectoine | Methylobacter marinus
BGC0000853.1 |  | 0.72 | Other | ectoine | Streptomyces anulatus
BGC0000856.1 |  | 0.72 | Other | ectoine | Methylophaga thalassica
BGC0000855.1 |  | 0.67 | Other | ectoine | Methylomicrobium kenyense
BGC0000857.1 |  | 0.65 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.64 | Other | ectoine | Methylarcula marina
BGC0000854.1 |  | 0.62 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000895.1 |  | 0.43 | Other | citrulline | Lactobacillus plantarum subsp. plantarum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00002_NZ_CCDP.. - Region 2 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 91,702 - 132,877 nt. (total: 41,176 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.28 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.28 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000852.1 |  | 0.24 | Other | ectoine | Sporosarcina pasteurii
BGC0000853.1 |  | 0.24 | Other | ectoine | Streptomyces anulatus
BGC0000841.1 |  | 0.24 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid | Streptomyces clavuligerus ATCC 27064
BGC0000857.1 |  | 0.24 | Other | ectoine | Methylophaga alcalica
BGC0000859.1 |  | 0.24 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000854.1 |  | 0.24 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000855.1 |  | 0.24 | Other | ectoine | Methylomicrobium kenyense
BGC0000879.1 |  | 0.24 | Other | toyocamycin, sangivamycin | Streptomyces rimosus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.61 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.61 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000852.1 |  | 0.57 | Other | ectoine | Sporosarcina pasteurii
BGC0000853.1 |  | 0.57 | Other | ectoine | Streptomyces anulatus
BGC0000841.1 |  | 0.57 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid | Streptomyces clavuligerus ATCC 27064
BGC0000857.1 |  | 0.57 | Other | ectoine | Methylophaga alcalica
BGC0000859.1 |  | 0.57 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000854.1 |  | 0.57 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000855.1 |  | 0.57 | Other | ectoine | Methylomicrobium kenyense
BGC0000879.1 |  | 0.57 | Other | toyocamycin, sangivamycin | Streptomyces rimosus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00002_NZ_CCDP.. - Region 3 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 728,029 - 748,850 nt. (total: 20,822 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000895.1 |  | 0.16 | Other | citrulline | Lactobacillus plantarum subsp. plantarum
BGC0000883.1 |  | 0.14 | Other | arginomycin | Streptomyces arginensis
BGC0001138.1 |  | 0.13 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0000343.1 |  | 0.08 | NRP | enterobactin | Pseudomonas sp. J465
BGC0000926.1 |  | 0.08 | Other | rhizocticin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000253.1 |  | 0.07 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000814.1 |  | 0.06 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000458.1 |  | 0.05 | NRP | viomycin | Streptomyces vinaceus
BGC0001370.1 |  | 0.05 | NRP | lipopeptide 8D1-1, lipopeptide 8D1-2 | Streptomyces rochei
BGC0000316.1 |  | 0.05 | NRP | capreomycin IA, capreomycin IB, capreomycin IIA, capreomycin IIB | Saccharothrix mutabilis subsp. capreolus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000895.1 |  | 0.47 | Other | citrulline | Lactobacillus plantarum subsp. plantarum
BGC0000883.1 |  | 0.43 | Other | arginomycin | Streptomyces arginensis
BGC0001138.1 |  | 0.42 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0000343.1 |  | 0.32 | NRP | enterobactin | Pseudomonas sp. J465
BGC0000926.1 |  | 0.31 | Other | rhizocticin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000253.1 |  | 0.27 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000814.1 |  | 0.27 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000458.1 |  | 0.23 | NRP | viomycin | Streptomyces vinaceus
BGC0001370.1 |  | 0.23 | NRP | lipopeptide 8D1-1, lipopeptide 8D1-2 | Streptomyces rochei
BGC0000316.1 |  | 0.22 | NRP | capreomycin IA, capreomycin IB, capreomycin IIA, capreomycin IIB | Saccharothrix mutabilis subsp. capreolus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names