Select genomic region:
Overview
1.1

### Identified secondary metabolite regions using strictness 'relaxed'

NC_016630.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | ranthipeptide | 590,462 | 612,225 |

NC_016630.1 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 590,462 - 612,225 nt. (total: 21,764 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001514.1 |  | 0.18 | Other | aristeromycin | Streptomyces citricolor
BGC0001323.1 |  | 0.17 | Terpene | monoterpenes-diterpenes | Solanum pennellii
BGC0001140.1 |  | 0.17 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000666.1 |  | 0.17 | Terpene | xiamycin A | Streptomyces sp. SCSIO 02999
BGC0000665.1 |  | 0.17 | Terpene, Alkaloid | xiamycin | Streptomyces sp. HKI0576
BGC0001156.1 |  | 0.17 | Terpene | platencin | Streptomyces platensis
BGC0000774.1 |  | 0.16 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001664.1 |  | 0.16 | Terpene | merosterol | Scytonema sp. PCC 10023
BGC0001321.1 |  | 0.13 | Terpene | monoterpenes-diterpenes | Solanum habrochaites
BGC0000466.1 |  | 0.13 | NRP | yatakemycin | Streptomyces sp. TP-A2060

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001514.1 |  | 0.50 | Other | aristeromycin | Streptomyces citricolor
BGC0001323.1 |  | 0.48 | Terpene | monoterpenes-diterpenes | Solanum pennellii
BGC0001140.1 |  | 0.48 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000666.1 |  | 0.48 | Terpene | xiamycin A | Streptomyces sp. SCSIO 02999
BGC0000665.1 |  | 0.48 | Terpene, Alkaloid | xiamycin | Streptomyces sp. HKI0576
BGC0001156.1 |  | 0.48 | Terpene | platencin | Streptomyces platensis
BGC0000774.1 |  | 0.46 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001664.1 |  | 0.46 | Terpene | merosterol | Scytonema sp. PCC 10023
BGC0001321.1 |  | 0.42 | Terpene | monoterpenes-diterpenes | Solanum habrochaites
BGC0000466.1 |  | 0.41 | NRP | yatakemycin | Streptomyces sp. TP-A2060

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names