GCF_030825295.1_ASM3082529v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00002_NZ_JAPJ.. (original name was: NZ_JAPJQE010000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	2,879	13,694

c00005_NZ_JAPJ.. (original name was: NZ_JAPJQE010000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	ranthipeptide	304,926	326,529

c00018_NZ_JAPJ.. (original name was: NZ_JAPJQE010000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	RRE-containing	213,503	233,844

Region	Type	From	To	Similarity
Region 2.1	RiPP-like	2,879	13,694
Region 5.1	ranthipeptide	304,926	326,529
Region 18.1	RRE-containing	213,503	233,844

No secondary metabolite regions were found in these records:: c00001_NZ_JAPJ.. (original name was: NZ_JAPJQE010000009.1); c00003_NZ_JAPJ.. (original name was: NZ_JAPJQE010000010.1); c00004_NZ_JAPJ.. (original name was: NZ_JAPJQE010000024.1); c00006_NZ_JAPJ.. (original name was: NZ_JAPJQE010000025.1); c00007_NZ_JAPJ.. (original name was: NZ_JAPJQE010000026.1); c00008_NZ_JAPJ.. (original name was: NZ_JAPJQE010000003.1); c00009_NZ_JAPJ.. (original name was: NZ_JAPJQE010000011.1); c00010_NZ_JAPJ.. (original name was: NZ_JAPJQE010000012.1); c00011_NZ_JAPJ.. (original name was: NZ_JAPJQE010000013.1); c00012_NZ_JAPJ.. (original name was: NZ_JAPJQE010000004.1); c00013_NZ_JAPJ.. (original name was: NZ_JAPJQE010000014.1); c00014_NZ_JAPJ.. (original name was: NZ_JAPJQE010000027.1); c00015_NZ_JAPJ.. (original name was: NZ_JAPJQE010000015.1); c00016_NZ_JAPJ.. (original name was: NZ_JAPJQE010000016.1); c00017_NZ_JAPJ.. (original name was: NZ_JAPJQE010000028.1); c00019_NZ_JAPJ.. (original name was: NZ_JAPJQE010000006.1); c00020_NZ_JAPJ.. (original name was: NZ_JAPJQE010000029.1); c00021_NZ_JAPJ.. (original name was: NZ_JAPJQE010000030.1); c00022_NZ_JAPJ.. (original name was: NZ_JAPJQE010000017.1); c00023_NZ_JAPJ.. (original name was: NZ_JAPJQE010000018.1); c00024_NZ_JAPJ.. (original name was: NZ_JAPJQE010000031.1); c00025_NZ_JAPJ.. (original name was: NZ_JAPJQE010000007.1); c00026_NZ_JAPJ.. (original name was: NZ_JAPJQE010000032.1); c00027_NZ_JAPJ.. (original name was: NZ_JAPJQE010000019.1); c00028_NZ_JAPJ.. (original name was: NZ_JAPJQE010000020.1); c00029_NZ_JAPJ.. (original name was: NZ_JAPJQE010000008.1); c00030_NZ_JAPJ.. (original name was: NZ_JAPJQE010000021.1); c00031_NZ_JAPJ.. (original name was: NZ_JAPJQE010000022.1); c00032_NZ_JAPJ.. (original name was: NZ_JAPJQE010000023.1)

Compact view

c00002_NZ_JAPJ.. - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 2,879 - 13,694 nt. (total: 10,816 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001472.1	0.09	RiPP	berninamycin A	Streptomyces bernensis
BGC0001427.1	0.07	NRP, Polyketide	myxochromide A	Myxococcus xanthus
BGC0001425.1	0.07	NRP, Polyketide	myxochromide A	Myxococcus xanthus DK 1622
BGC0001426.1	0.07	NRP, Polyketide	myxochromide A	Myxococcus xanthus
BGC0001424.1	0.07	NRP, Polyketide	myxochromide C	Myxococcus virescens
BGC0001428.1	0.07	NRP, Polyketide	myxochromide A	Myxococcus xanthus
BGC0001423.1	0.07	NRP, Polyketide	myxochromide C	Myxococcus hansupus
BGC0001421.1	0.07	NRP, Polyketide	myxochromide B	Myxococcus sp.
BGC0000615.1	0.06	RiPP	TP-1161	Nocardiopsis sp. TFS65-07
BGC0000610.1	0.05	RiPP	nosiheptide	Streptomyces actuosus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001472.1	0.33	RiPP	berninamycin A	Streptomyces bernensis
BGC0001427.1	0.29	NRP, Polyketide	myxochromide A	Myxococcus xanthus
BGC0001425.1	0.29	NRP, Polyketide	myxochromide A	Myxococcus xanthus DK 1622
BGC0001426.1	0.29	NRP, Polyketide	myxochromide A	Myxococcus xanthus
BGC0001424.1	0.29	NRP, Polyketide	myxochromide C	Myxococcus virescens
BGC0001428.1	0.29	NRP, Polyketide	myxochromide A	Myxococcus xanthus
BGC0001423.1	0.29	NRP, Polyketide	myxochromide C	Myxococcus hansupus
BGC0001421.1	0.29	NRP, Polyketide	myxochromide B	Myxococcus sp.
BGC0000615.1	0.26	RiPP	TP-1161	Nocardiopsis sp. TFS65-07
BGC0000610.1	0.24	RiPP	nosiheptide	Streptomyces actuosus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00005_NZ_JAPJ.. - Region 1 - ranthipeptide

Download region GenBank file

Download region SVG

Location: 304,926 - 326,529 nt. (total: 21,604 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000588.1	0.13	RiPP	microcin L	Escherichia coli
BGC0000695.1	0.10	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000463.1	0.09	NRP	xantholysin A, xantholysin B, xantholysin C	Pseudomonas putida
BGC0000323.1	0.09	NRP	cichofactin A, cichofactin B	Pseudomonas cichorii
BGC0000435.1	0.09	NRP	syringafactin	Pseudomonas syringae pv. tomato str. DC3000
BGC0000487.1	0.08	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000398.1	0.08	NRP	orfamide B	Pseudomonas sp. CMR12a
BGC0000399.1	0.08	NRP	orfamide A, orfamide C	Pseudomonas protegens Pf-5
BGC0000397.1	0.07	NRP	nostocyclopeptide A2	Nostoc sp. ATCC 53789
BGC0001842.1	0.07	NRP	gacamide A	Pseudomonas fluorescens Pf0-1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000588.1	0.41	RiPP	microcin L	Escherichia coli
BGC0000695.1	0.35	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000463.1	0.33	NRP	xantholysin A, xantholysin B, xantholysin C	Pseudomonas putida
BGC0000323.1	0.33	NRP	cichofactin A, cichofactin B	Pseudomonas cichorii
BGC0000435.1	0.33	NRP	syringafactin	Pseudomonas syringae pv. tomato str. DC3000
BGC0000487.1	0.32	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000398.1	0.32	NRP	orfamide B	Pseudomonas sp. CMR12a
BGC0000399.1	0.30	NRP	orfamide A, orfamide C	Pseudomonas protegens Pf-5
BGC0000397.1	0.29	NRP	nostocyclopeptide A2	Nostoc sp. ATCC 53789
BGC0001842.1	0.29	NRP	gacamide A	Pseudomonas fluorescens Pf0-1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00018_NZ_JAPJ.. - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 213,503 - 233,844 nt. (total: 20,342 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001475.1	0.17	Polyketide	aspterric acid	Aspergillus terreus NIH2624
BGC0001588.1	0.16	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0001589.1	0.16	Saccharide	exopolysaccharides	Burkholderia cenocepacia J2315
BGC0001928.1	0.16	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001120.1	0.16	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000706.1	0.15	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001289.1	0.10	RiPP	penisin	Paenibacillus ehimensis
BGC0001636.1	0.07	NRP	KK-1	Curvularia clavata
BGC0001838.1	0.07	NRP	WLIP	Pseudomonas putida
BGC0000145.1	0.06	Polyketide	salinosporamide A	Salinispora tropica

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001475.1	0.48	Polyketide	aspterric acid	Aspergillus terreus NIH2624
BGC0001588.1	0.47	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0001589.1	0.47	Saccharide	exopolysaccharides	Burkholderia cenocepacia J2315
BGC0001928.1	0.46	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001120.1	0.46	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000706.1	0.45	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001289.1	0.35	RiPP	penisin	Paenibacillus ehimensis
BGC0001636.1	0.29	NRP	KK-1	Curvularia clavata
BGC0001838.1	0.28	NRP	WLIP	Pseudomonas putida
BGC0000145.1	0.25	Polyketide	salinosporamide A	Salinispora tropica

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names