GCF_900107245.1_IMG-taxon_2593339158_annotated_assembly_genomic - 6 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_FNPG01000020 (original name was: NZ_FNPG01000020.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	NRPS	12,172	66,214

NZ_FNPG01000015 (original name was: NZ_FNPG01000015.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	NRPS	33,467	76,179

NZ_FNPG01000029 (original name was: NZ_FNPG01000029.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	ranthipeptide	24,621	40,987

NZ_FNPG01000006 (original name was: NZ_FNPG01000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	RiPP-like	66,912	77,133

NZ_FNPG01000038 (original name was: NZ_FNPG01000038.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	cyclic-lactone-autoinducer	1	12,435

NZ_FNPG01000023 (original name was: NZ_FNPG01000023.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	NRPS-like	1	25,918

Region	Type	From	To	Similarity
Region 9.1	NRPS	12,172	66,214
Region 12.1	NRPS	33,467	76,179
Region 20.1	ranthipeptide	24,621	40,987
Region 38.1	RiPP-like	66,912	77,133
Region 51.1	cyclic-lactone-autoinducer	1	12,435
Region 55.1	NRPS-like	1	25,918

No secondary metabolite regions were found in these records:: NZ_FNPG01000057 (original name was: NZ_FNPG01000057.1); NZ_FNPG01000056 (original name was: NZ_FNPG01000056.1); NZ_FNPG01000055 (original name was: NZ_FNPG01000055.1); NZ_FNPG01000054 (original name was: NZ_FNPG01000054.1); NZ_FNPG01000049 (original name was: NZ_FNPG01000049.1); NZ_FNPG01000047 (original name was: NZ_FNPG01000047.1); NZ_FNPG01000053 (original name was: NZ_FNPG01000053.1); NZ_FNPG01000021 (original name was: NZ_FNPG01000021.1); NZ_FNPG01000052 (original name was: NZ_FNPG01000052.1); NZ_FNPG01000007 (original name was: NZ_FNPG01000007.1); NZ_FNPG01000044 (original name was: NZ_FNPG01000044.1); NZ_FNPG01000019 (original name was: NZ_FNPG01000019.1); NZ_FNPG01000040 (original name was: NZ_FNPG01000040.1); NZ_FNPG01000017 (original name was: NZ_FNPG01000017.1); NZ_FNPG01000016 (original name was: NZ_FNPG01000016.1); NZ_FNPG01000051 (original name was: NZ_FNPG01000051.1); NZ_FNPG01000024 (original name was: NZ_FNPG01000024.1); NZ_FNPG01000013 (original name was: NZ_FNPG01000013.1); NZ_FNPG01000032 (original name was: NZ_FNPG01000032.1); NZ_FNPG01000035 (original name was: NZ_FNPG01000035.1); NZ_FNPG01000012 (original name was: NZ_FNPG01000012.1); NZ_FNPG01000008 (original name was: NZ_FNPG01000008.1); NZ_FNPG01000034 (original name was: NZ_FNPG01000034.1); NZ_FNPG01000014 (original name was: NZ_FNPG01000014.1); NZ_FNPG01000011 (original name was: NZ_FNPG01000011.1); NZ_FNPG01000002 (original name was: NZ_FNPG01000002.1); NZ_FNPG01000028 (original name was: NZ_FNPG01000028.1); NZ_FNPG01000022 (original name was: NZ_FNPG01000022.1); NZ_FNPG01000018 (original name was: NZ_FNPG01000018.1); NZ_FNPG01000004 (original name was: NZ_FNPG01000004.1); NZ_FNPG01000042 (original name was: NZ_FNPG01000042.1); NZ_FNPG01000005 (original name was: NZ_FNPG01000005.1); NZ_FNPG01000048 (original name was: NZ_FNPG01000048.1); NZ_FNPG01000046 (original name was: NZ_FNPG01000046.1); NZ_FNPG01000009 (original name was: NZ_FNPG01000009.1); NZ_FNPG01000050 (original name was: NZ_FNPG01000050.1); NZ_FNPG01000010 (original name was: NZ_FNPG01000010.1); NZ_FNPG01000027 (original name was: NZ_FNPG01000027.1); NZ_FNPG01000025 (original name was: NZ_FNPG01000025.1); NZ_FNPG01000003 (original name was: NZ_FNPG01000003.1); NZ_FNPG01000026 (original name was: NZ_FNPG01000026.1); NZ_FNPG01000030 (original name was: NZ_FNPG01000030.1); NZ_FNPG01000033 (original name was: NZ_FNPG01000033.1); NZ_FNPG01000036 (original name was: NZ_FNPG01000036.1); NZ_FNPG01000037 (original name was: NZ_FNPG01000037.1); NZ_FNPG01000058 (original name was: NZ_FNPG01000058.1); NZ_FNPG01000031 (original name was: NZ_FNPG01000031.1); NZ_FNPG01000045 (original name was: NZ_FNPG01000045.1); NZ_FNPG01000039 (original name was: NZ_FNPG01000039.1); NZ_FNPG01000041 (original name was: NZ_FNPG01000041.1); NZ_FNPG01000043 (original name was: NZ_FNPG01000043.1)

Compact view

c00009_NZ_FNPG.. - Region 1 - NRPS

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Location: 12,172 - 66,214 nt. (total: 54,043 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000389.1	0.37	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000457.1	0.31	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001825.1	0.29	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000396.1	0.28	NRP	nodularin	Nostoc sp. 73.1
BGC0001833.1	0.28	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001343.1	0.28	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001128.1	0.27	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.27	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001826.1	0.27	NRP	xeneprotides A-C	Xenorhabdus sp. KJ12.1
BGC0000410.1	0.26	NRP	pseudomonine	Pseudomonas fluorescens

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000389.1	0.70	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000457.1	0.64	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001825.1	0.62	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000396.1	0.62	NRP	nodularin	Nostoc sp. 73.1
BGC0001833.1	0.62	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001343.1	0.61	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001128.1	0.61	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.61	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001826.1	0.60	NRP	xeneprotides A-C	Xenorhabdus sp. KJ12.1
BGC0000410.1	0.60	NRP	pseudomonine	Pseudomonas fluorescens

Similar known gene clusters

No matches found.

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 12171 - 66214:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - D-thr - tyr) + (mal - gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg9_33

Search NORINE for peptide: strict or relaxed

AMP-binding (467..870): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: phe, trp
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASiIAdVCK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 80% (moderate)

AMP-binding (1511..1923): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DsWdiGLIgK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

AMP-binding (3106..3509): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (4658..5071): tyr

NRPSPredictor2: tyr

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVvK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

ctg9_34

Search NORINE for peptide: strict or relaxed

AMP-binding (1260..1669): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGvVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

ctg9_39

PKS_AT (7..306): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%; inactive: 62.5%; Methylmalonyl-CoA: 54.2%

minowa: inactive

Prediction, score:

inactive: 73.2
Malonyl-CoA: 70.0
Methoxymalonyl-CoA: 35.8
Methylmalonyl-CoA: 33.2
Isobutyryl-CoA: 12.7
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

c00012_NZ_FNPG.. - Region 1 - NRPS

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Location: 33,467 - 76,179 nt. (total: 42,713 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000465.1	0.33	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.25	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000457.1	0.24	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001343.1	0.23	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000900.1	0.23	Other	ferrichrome	Aspergillus oryzae
BGC0000287.1	0.23	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0000460.1	0.22	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0001591.1	0.22	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.22	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000375.1	0.21	NRP	indigoidine	Streptomyces chromofuscus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000465.1	0.66	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.59	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000457.1	0.57	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001343.1	0.56	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000900.1	0.56	Other	ferrichrome	Aspergillus oryzae
BGC0000287.1	0.56	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0000460.1	0.55	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0001591.1	0.55	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.55	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000375.1	0.54	NRP	indigoidine	Streptomyces chromofuscus

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 33466 - 76179:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-cys - cys) + (D-X - cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg12_48

Search NORINE for peptide: strict or relaxed

AMP-binding (461..852): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAFfsGGcFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 70% (weak)

AMP-binding (1923..2301): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DmyqMGiiMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 50% (weak)

ctg12_50

Search NORINE for peptide: strict or relaxed

AMP-binding (450..828): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

AMP-binding (1890..2282): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DmYniGVLWK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

c00020_NZ_FNPG.. - Region 1 - ranthipeptide

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Location: 24,621 - 40,987 nt. (total: 16,367 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000522.1	0.16	RiPP	lacticin Z	Lactococcus lactis
BGC0000620.1	0.15	RiPP	lacticin Q	Lactococcus lactis
BGC0000486.1	0.15	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001743.1	0.15	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000616.1	0.15	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000595.1	0.14	RiPP	SCO-2138	Streptomyces coelicolor A3(2)
BGC0000596.1	0.14	RiPP	SLI-2138	Streptomyces lividans TK24
BGC0001120.1	0.13	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000243.1	0.13	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000736.1	0.13	Saccharide	capsular polysaccharide	Mannheimia haemolytica

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000522.1	0.46	RiPP	lacticin Z	Lactococcus lactis
BGC0000620.1	0.46	RiPP	lacticin Q	Lactococcus lactis
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001743.1	0.46	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000616.1	0.45	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000595.1	0.43	RiPP	SCO-2138	Streptomyces coelicolor A3(2)
BGC0000596.1	0.43	RiPP	SLI-2138	Streptomyces lividans TK24
BGC0001120.1	0.42	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000243.1	0.42	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000736.1	0.42	Saccharide	capsular polysaccharide	Mannheimia haemolytica

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00038_NZ_FNPG.. - Region 1 - RiPP-like

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Location: 66,912 - 77,133 nt. (total: 10,222 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000489.1	0.32	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000494.1	0.16	RiPP	uberolysin	Streptococcus uberis
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000548.1	0.16	RiPP	salivaricin A	Streptococcus salivarius
BGC0001222.1	0.15	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.15	RiPP	gassericin A	Lactobacillus gasseri
BGC0001743.1	0.15	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0001887.1	0.15	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000916.1	0.15	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0000488.1	0.14	RiPP	circularin A	Clostridium beijerinckii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000489.1	0.66	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000494.1	0.47	RiPP	uberolysin	Streptococcus uberis
BGC0000616.1	0.46	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000548.1	0.46	RiPP	salivaricin A	Streptococcus salivarius
BGC0001222.1	0.46	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0001743.1	0.45	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0001887.1	0.45	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000916.1	0.44	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0000488.1	0.43	RiPP	circularin A	Clostridium beijerinckii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00051_NZ_FNPG.. - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 12,435 nt. (total: 12,435 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000601.1	0.19	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000569.1	0.17	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001173.1	0.16	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0001494.1	0.16	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0001743.1	0.16	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000617.1	0.15	RiPP	coagulin	Bacillus coagulans
BGC0000780.1	0.15	Saccharide	O&K-antigen	Vibrio parahaemolyticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000601.1	0.50	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000569.1	0.48	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001173.1	0.47	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001222.1	0.47	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.47	RiPP	gassericin A	Lactobacillus gasseri
BGC0001494.1	0.46	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0001743.1	0.46	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans
BGC0000780.1	0.45	Saccharide	O&K-antigen	Vibrio parahaemolyticus

Similar known gene clusters

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Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00055_NZ_FNPG.. - Region 1 - NRPS-like

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Location: 1 - 25,918 nt. (total: 25,918 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001903.1	0.20	Other	neocarazostatin A	Streptomyces sp. MA37
BGC0001444.1	0.19	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001538.1	0.19	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0000843.1	0.18	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0001479.1	0.17	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001900.1	0.17	NRP	fragin	Burkholderia cenocepacia H111
BGC0001128.1	0.17	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001151.1	0.16	Other (Non-NRP beta-lactam)	valclavam, (-)-2-(2-hydroxyethyl)clavam	Streptomyces antibioticus
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001903.1	0.53	Other	neocarazostatin A	Streptomyces sp. MA37
BGC0001444.1	0.51	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001538.1	0.51	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0000843.1	0.49	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0001479.1	0.48	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001900.1	0.48	NRP	fragin	Burkholderia cenocepacia H111
BGC0001128.1	0.48	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001151.1	0.47	Other (Non-NRP beta-lactam)	valclavam, (-)-2-(2-hydroxyethyl)clavam	Streptomyces antibioticus
BGC0001407.1	0.47	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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