GCF_016027095.1_ASM1602709v1_genomic - 2 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP065670.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	terpene	2,044,467	2,072,571	zeaxanthin	Terpene	100%
Region 1.2	NRPS-like	2,177,518	2,220,046

No secondary metabolite regions were found in these records:: NZ_CP065669.1; NZ_CP065671.1; NZ_CP065672.1

Compact view

NZ_CP065670.1 - Region 1 - terpene

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Location: 2,044,467 - 2,072,571 nt. (total: 28,105 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000656.1	0.41	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000647.1	0.35	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000640.1	0.28	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000630.1	0.28	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000641.1	0.25	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000639.1	0.25	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000638.1	0.25	Terpene	carotenoid	Pantoea ananatis
BGC0000645.1	0.24	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0000646.1	0.24	Terpene	β-carotein	uncultured bacterium
BGC0000642.1	0.24	Terpene	carotenoid	Enterobacteriaceae bacterium DC413

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000656.1	0.72	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000647.1	0.68	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000640.1	0.62	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000630.1	0.62	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000641.1	0.58	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000639.1	0.58	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000638.1	0.58	Terpene	carotenoid	Pantoea ananatis
BGC0000645.1	0.58	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0000646.1	0.57	Terpene	β-carotein	uncultured bacterium
BGC0000642.1	0.57	Terpene	carotenoid	Enterobacteriaceae bacterium DC413

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP065670.1 - Region 2 - NRPS-like

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Location: 2,177,518 - 2,220,046 nt. (total: 42,529 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000957.1	0.23	NRP, Polyketide	mycotrienin I	Streptomyces sp. XZQH13
BGC0000375.1	0.22	NRP	indigoidine	Streptomyces chromofuscus
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000343.1	0.21	NRP	enterobactin	Pseudomonas sp. J465
BGC0001399.1	0.21	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001844.1	0.19	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.19	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001758.1	0.19	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001767.1	0.19	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001132.1	0.19	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000957.1	0.56	NRP, Polyketide	mycotrienin I	Streptomyces sp. XZQH13
BGC0000375.1	0.55	NRP	indigoidine	Streptomyces chromofuscus
BGC0000427.1	0.54	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000343.1	0.54	NRP	enterobactin	Pseudomonas sp. J465
BGC0001399.1	0.54	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001844.1	0.51	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.51	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001758.1	0.51	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001767.1	0.51	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001132.1	0.51	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 2177517 - 2220046:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_2014

Search NORINE for peptide: strict or relaxed

AMP-binding (22..409): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DlpQLGiVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)