GCF_003967075.1_ASM396707v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AP018664.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	terpene	52,126	76,361	carotenoid	Terpene	50%
Region 1.2	lassopeptide,hserlactone	1,056,836	1,081,675
Region 1.3	betalactone	2,227,587	2,256,104
Region 1.4	RiPP-like	2,744,597	2,755,427

No secondary metabolite regions were found in these records:: NZ_AP018665.1; NZ_AP018666.1; NZ_AP018667.1; NZ_AP018668.1; NZ_AP018669.1; NZ_AP018670.1

Compact view

NZ_AP018664.1 - Region 1 - terpene

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Location: 52,126 - 76,361 nt. (total: 24,236 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000656.1	0.44	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000647.1	0.38	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000640.1	0.31	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000630.1	0.31	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000633.1	0.28	Terpene	carotenoid	Streptomyces avermitilis
BGC0000648.1	0.28	Terpene	carotenoid	Myxococcus xanthus
BGC0000664.1	0.28	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000643.1	0.27	Terpene	carotenoid	Brevundimonas vesicularis
BGC0001227.1	0.26	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000634.1	0.26	Terpene	carotenoid	Brevundimonas sp. SD212

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000656.1	0.75	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000647.1	0.70	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000640.1	0.64	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000630.1	0.64	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000633.1	0.62	Terpene	carotenoid	Streptomyces avermitilis
BGC0000648.1	0.62	Terpene	carotenoid	Myxococcus xanthus
BGC0000664.1	0.62	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000643.1	0.60	Terpene	carotenoid	Brevundimonas vesicularis
BGC0001227.1	0.60	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000634.1	0.59	Terpene	carotenoid	Brevundimonas sp. SD212

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_AP018664.1 - Region 2 - hserlactone,lassopeptide

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Location: 1,056,836 - 1,081,675 nt. (total: 24,840 nt) Show pHMM detection rules used

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)
hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Lasso peptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000580.1	0.66	RiPP	xanthomonin I, xanthomonin II	Xanthomonas gardneri ATCC 19865
BGC0000576.1	0.65	RiPP	rubrivinodin	Rubrivivax gelatinosus IL144
BGC0000577.1	0.58	RiPP	sphingonodin II	Sphingobium japonicum UT26S
BGC0001786.1	0.49	RiPP	subterisin	Novosphingobium subterraneum
BGC0000573.1	0.45	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0001395.1	0.17	Other	teichomycin	Actinoplanes teichomyceticus
BGC0001793.1	0.16	Polyketide	swainsonine	Chaetothyriaceae sp.
BGC0001926.1	0.15	Polyketide	chrodrimanin B	Talaromyces verruculosus
BGC0000356.1	0.14	NRP, Alkaloid	verruculogen, fumitremorgin B, fumitremorgin c, tryprostatin A, tryprostatin B, demethoxyfumitremorgin C, brevianamide F	Aspergillus fumigatus
BGC0000682.1	0.13	Terpene	terretonin	Aspergillus terreus NIH2624

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000580.1	0.66	RiPP	xanthomonin I, xanthomonin II	Xanthomonas gardneri ATCC 19865
BGC0000576.1	0.66	RiPP	rubrivinodin	Rubrivivax gelatinosus IL144
BGC0000577.1	0.63	RiPP	sphingonodin II	Sphingobium japonicum UT26S
BGC0001786.1	0.59	RiPP	subterisin	Novosphingobium subterraneum
BGC0000573.1	0.56	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0001395.1	0.32	Other	teichomycin	Actinoplanes teichomyceticus
BGC0001793.1	0.31	Polyketide	swainsonine	Chaetothyriaceae sp.
BGC0001926.1	0.29	Polyketide	chrodrimanin B	Talaromyces verruculosus
BGC0000356.1	0.28	NRP, Alkaloid	verruculogen, fumitremorgin B, fumitremorgin c, tryprostatin A, tryprostatin B, demethoxyfumitremorgin C, brevianamide F	Aspergillus fumigatus
BGC0000682.1	0.27	Terpene	terretonin	Aspergillus terreus NIH2624

Similar known gene clusters

No matches found.

Lasso peptide predictions

Lassopeptide(s) for ctg1_991 - Putative Class II

ctg1_991 leader / core peptide / cleaved tail: MERDNDVIELGAVSVETK - GPGGITGDVGLGENNFG - LSDD

Legend:

Red: Putative macrolactam
Purple: Putative cleaved off residues

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lasso peptides

Core peptide predictions

ctg1_991 - Class II: Cleavage pHMM score: 10.20; RODEO score: 23; Monoisotopic mass: 1541.7 Da; Molecular weight: 1542.6 Da; Number of bridges: 0

NZ_AP018664.1 - Region 3 - betalactone

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Location: 2,227,587 - 2,256,104 nt. (total: 28,518 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000886.1	0.21	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000649.1	0.20	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000466.1	0.18	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0001441.1	0.18	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0000507.1	0.18	RiPP	epicidin	Staphylococcus epidermidis
BGC0000914.1	0.18	Other	methylenomycin A	Streptomyces coelicolor A3(2)
BGC0000460.1	0.18	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0000509.1	0.17	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000246.1	0.17	Polyketide	mithramycin	Streptomyces argillaceus
BGC0000343.1	0.16	NRP	enterobactin	Pseudomonas sp. J465

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000886.1	0.53	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000649.1	0.53	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000466.1	0.50	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0001441.1	0.50	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0000507.1	0.50	RiPP	epicidin	Staphylococcus epidermidis
BGC0000914.1	0.49	Other	methylenomycin A	Streptomyces coelicolor A3(2)
BGC0000460.1	0.49	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0000509.1	0.49	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000246.1	0.48	Polyketide	mithramycin	Streptomyces argillaceus
BGC0000343.1	0.47	NRP	enterobactin	Pseudomonas sp. J465

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_AP018664.1 - Region 4 - RiPP-like

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Location: 2,744,597 - 2,755,427 nt. (total: 10,831 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	RiPP-like	Similarity score	Type	Compound(s)	Organism
BGC0001285.1		0.04	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0001285.1		0.20	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names