Select genomic region:
Overview
4.1
29.1
29.2
30.1
30.2
32.1
39.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00004_NZ_CABK.. (original name was: NZ_CABKTM010000007.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ranthipeptide,cyclic-lactone-autoinducer | 12,576 | 37,641 |

c00029_NZ_CABK.. (original name was: NZ_CABKTM010000043.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 29.1 | RiPP-like | 128,343 | 139,128 |
Region 29.2 | ranthipeptide | 494,320 | 515,901 |

c00030_NZ_CABK.. (original name was: NZ_CABKTM010000044.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 30.1 | cyclic-lactone-autoinducer | 15,469 | 36,221 |
Region 30.2 | RRE-containing | 38,447 | 59,793 |

c00032_NZ_CABK.. (original name was: NZ_CABKTM010000049.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 32.1 | ranthipeptide | 158,483 | 182,335 |

c00039_NZ_CABK.. (original name was: NZ_CABKTM010000074.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 39.1 | RRE-containing | 26,578 | 47,120 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ranthipeptide,cyclic-lactone-autoinducer | 12,576 | 37,641 |
Region 29.1 | RiPP-like | 128,343 | 139,128 |
Region 29.2 | ranthipeptide | 494,320 | 515,901 |
Region 30.1 | cyclic-lactone-autoinducer | 15,469 | 36,221 |
Region 30.2 | RRE-containing | 38,447 | 59,793 |
Region 32.1 | ranthipeptide | 158,483 | 182,335 |
Region 39.1 | RRE-containing | 26,578 | 47,120 |

No secondary metabolite regions were found in these records:
  c00001_NZ_CABK.. (original name was: NZ_CABKTM010000004.1)
  c00002_NZ_CABK.. (original name was: NZ_CABKTM010000005.1)
  c00003_NZ_CABK.. (original name was: NZ_CABKTM010000006.1)
  c00005_NZ_CABK.. (original name was: NZ_CABKTM010000008.1)
  c00006_NZ_CABK.. (original name was: NZ_CABKTM010000009.1)
  c00007_NZ_CABK.. (original name was: NZ_CABKTM010000010.1)
  c00008_NZ_CABK.. (original name was: NZ_CABKTM010000011.1)
  c00009_NZ_CABK.. (original name was: NZ_CABKTM010000012.1)
  c00010_NZ_CABK.. (original name was: NZ_CABKTM010000013.1)
  c00011_NZ_CABK.. (original name was: NZ_CABKTM010000014.1)
  c00012_NZ_CABK.. (original name was: NZ_CABKTM010000015.1)
  c00013_NZ_CABK.. (original name was: NZ_CABKTM010000016.1)
  c00014_NZ_CABK.. (original name was: NZ_CABKTM010000017.1)
  c00015_NZ_CABK.. (original name was: NZ_CABKTM010000018.1)
  c00016_NZ_CABK.. (original name was: NZ_CABKTM010000019.1)
  c00017_NZ_CABK.. (original name was: NZ_CABKTM010000020.1)
  c00018_NZ_CABK.. (original name was: NZ_CABKTM010000021.1)
  c00019_NZ_CABK.. (original name was: NZ_CABKTM010000022.1)
  c00020_NZ_CABK.. (original name was: NZ_CABKTM010000023.1)
  c00021_NZ_CABK.. (original name was: NZ_CABKTM010000024.1)
  c00022_NZ_CABK.. (original name was: NZ_CABKTM010000025.1)
  c00023_NZ_CABK.. (original name was: NZ_CABKTM010000026.1)
  c00024_NZ_CABK.. (original name was: NZ_CABKTM010000027.1)
  c00025_NZ_CABK.. (original name was: NZ_CABKTM010000028.1)
  c00026_NZ_CABK.. (original name was: NZ_CABKTM010000029.1)
  c00027_NZ_CABK.. (original name was: NZ_CABKTM010000030.1)
  c00028_NZ_CABK.. (original name was: NZ_CABKTM010000031.1)
  c00031_NZ_CABK.. (original name was: NZ_CABKTM010000045.1)
  c00033_NZ_CABK.. (original name was: NZ_CABKTM010000060.1)
  c00034_NZ_CABK.. (original name was: NZ_CABKTM010000061.1)
  c00035_NZ_CABK.. (original name was: NZ_CABKTM010000062.1)
  c00036_NZ_CABK.. (original name was: NZ_CABKTM010000063.1)
  c00037_NZ_CABK.. (original name was: NZ_CABKTM010000064.1)
  c00038_NZ_CABK.. (original name was: NZ_CABKTM010000065.1)
  c00040_NZ_CABK.. (original name was: NZ_CABKTM010000075.1)
  c00041_NZ_CABK.. (original name was: NZ_CABKTM010000076.1)
  c00042_NZ_CABK.. (original name was: NZ_CABKTM010000077.1)
  c00043_NZ_CABK.. (original name was: NZ_CABKTM010000078.1)

Compact view
c00004_NZ_CABK.. - Region 1 - cyclic-lactone-autoinducer,ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 12,576 - 37,641 nt. (total: 25,066 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000602.1 |  |  | 0.43 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000472.1 |  |  | 0.42 | RiPP | anacyclamide A10 | Anabaena sp. 90
BGC0001929.1 |  |  | 0.42 | RiPP | WGK | Streptococcus ferus
BGC0000600.1 |  |  | 0.40 | RiPP | thurincin H | Bacillus thuringiensis
BGC0001552.1 |  |  | 0.38 | RiPP | citrulassin F | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001550.1 |  |  | 0.38 | RiPP | citrulassin D | Streptomyces katrae
BGC0000575.1 |  |  | 0.38 | RiPP | lariatin | Rhodococcus jostii
BGC0001618.1 |  |  | 0.37 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0000504.1 |  |  | 0.36 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000842.1 |  |  | 0.36 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000472.1 |  | 0.57 | RiPP | anacyclamide A10 | Anabaena sp. 90
BGC0001505.1 |  | 0.57 | RiPP | anacyclamide D8P | Sphaerospermopsis sp. LEGE 00249
BGC0001933.1 |  | 0.57 | RiPP | sphaerocyclamide | Sphaerospermopsis sp. LEGE 00249
BGC0001167.1 |  | 0.57 | RiPP | piricyclamide | Microcystis aeruginosa PCC 7005
BGC0000479.1 |  | 0.57 | RiPP | prenylagaramide B, prenylagaramide C | Planktothrix agardhii NIES-596
BGC0000602.1 |  | 0.55 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001929.1 |  | 0.54 | RiPP | WGK | Streptococcus ferus
BGC0000600.1 |  | 0.52 | RiPP | thurincin H | Bacillus thuringiensis
BGC0000842.1 |  | 0.52 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0001552.1 |  | 0.51 | RiPP | citrulassin F | Streptomyces avermitilis MA-4680 = NBRC 14893

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00029_NZ_CABK.. - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 128,343 - 139,128 nt. (total: 10,786 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000550.1 |  | 0.16 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0000883.1 |  | 0.14 | Other | arginomycin | Streptomyces arginensis
BGC0000466.1 |  | 0.13 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0000527.1 |  | 0.12 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000547.1 |  | 0.12 | RiPP | salivaricin 9 | Streptococcus salivarius
BGC0000043.1 |  | 0.11 | Polyketide | curacin A | Moorea producens 19L
BGC0000506.1 |  | 0.10 | RiPP | entianin | Bacillus subtilis subsp. spizizenii
BGC0000557.1 |  | 0.10 | RiPP | streptococcin A-FF22 | Streptococcus pyogenes
BGC0000515.1 |  | 0.10 | RiPP | geobacillin I | Geobacillus thermodenitrificans NG80-2
BGC0000556.1 |  | 0.10 | RiPP | streptin | Streptococcus pyogenes

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000550.1 |  | 0.46 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0000883.1 |  | 0.44 | Other | arginomycin | Streptomyces arginensis
BGC0000466.1 |  | 0.42 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0000527.1 |  | 0.39 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000547.1 |  | 0.39 | RiPP | salivaricin 9 | Streptococcus salivarius
BGC0000043.1 |  | 0.39 | Polyketide | curacin A | Moorea producens 19L
BGC0000506.1 |  | 0.36 | RiPP | entianin | Bacillus subtilis subsp. spizizenii
BGC0000557.1 |  | 0.36 | RiPP | streptococcin A-FF22 | Streptococcus pyogenes
BGC0000515.1 |  | 0.36 | RiPP | geobacillin I | Geobacillus thermodenitrificans NG80-2
BGC0000556.1 |  | 0.35 | RiPP | streptin | Streptococcus pyogenes

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00029_NZ_CABK.. - Region 2 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 494,320 - 515,901 nt. (total: 21,582 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.13 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001887.1 |  | 0.13 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000695.1 |  | 0.10 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0001190.1 |  | 0.05 | Polyketide | fusaric acid | Fusarium verticillioides 7600
BGC0001591.1 |  | 0.05 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.05 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0000027.1 |  | 0.05 | Polyketide | ankaflavin, monascin, rubropunctatine, monascorubrin | Monascus pilosus
BGC0001089.1 |  | 0.04 | Polyketide, NRP | bacillaene | Bacillus velezensis FZB42
BGC0000689.1 |  | 0.04 | Saccharide | 2-deoxystreptamine | Micromonospora echinospora
BGC0001603.1 |  | 0.03 | Saccharide | gentamicin | Micromonospora echinospora

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.42 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001887.1 |  | 0.41 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000695.1 |  | 0.35 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0001190.1 |  | 0.23 | Polyketide | fusaric acid | Fusarium verticillioides 7600
BGC0001591.1 |  | 0.23 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.23 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0000027.1 |  | 0.22 | Polyketide | ankaflavin, monascin, rubropunctatine, monascorubrin | Monascus pilosus
BGC0001089.1 |  | 0.18 | Polyketide, NRP | bacillaene | Bacillus velezensis FZB42
BGC0000689.1 |  | 0.17 | Saccharide | 2-deoxystreptamine | Micromonospora echinospora
BGC0001603.1 |  | 0.16 | Saccharide | gentamicin | Micromonospora echinospora

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00030_NZ_CABK.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 15,469 - 36,221 nt. (total: 20,753 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000616.1 |  | 0.16 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001743.1 |  | 0.16 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000486.1 |  | 0.16 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001222.1 |  | 0.15 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.15 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000554.1 |  | 0.15 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001289.1 |  | 0.15 | RiPP | penisin | Paenibacillus ehimensis
BGC0000243.1 |  | 0.14 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001514.1 |  | 0.14 | Other | aristeromycin | Streptomyces citricolor
BGC0001887.1 |  | 0.14 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000616.1 |  | 0.47 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001743.1 |  | 0.46 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.45 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000554.1 |  | 0.45 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001289.1 |  | 0.45 | RiPP | penisin | Paenibacillus ehimensis
BGC0000243.1 |  | 0.44 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001514.1 |  | 0.43 | Other | aristeromycin | Streptomyces citricolor
BGC0001887.1 |  | 0.43 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00030_NZ_CABK.. - Region 2 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 38,447 - 59,793 nt. (total: 21,347 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.18 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000783.1 |  | 0.18 | Saccharide | O-antigen | Xanthomonas oryzae pv. oryzae
BGC0000486.1 |  | 0.17 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001222.1 |  | 0.16 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.16 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.16 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0001779.1 |  | 0.16 | RiPP | siamycin | Streptomyces nodosus
BGC0000521.1 |  | 0.16 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis
BGC0000626.1 |  | 0.16 | RiPP | thuricin | Bacillus thuringiensis
BGC0001639.1 |  | 0.16 | RiPP | klebsidin | Klebsiella pneumoniae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.50 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000783.1 |  | 0.49 | Saccharide | O-antigen | Xanthomonas oryzae pv. oryzae
BGC0000486.1 |  | 0.48 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001222.1 |  | 0.47 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.47 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.47 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0001779.1 |  | 0.47 | RiPP | siamycin | Streptomyces nodosus
BGC0000521.1 |  | 0.46 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis
BGC0000626.1 |  | 0.46 | RiPP | thuricin | Bacillus thuringiensis
BGC0001639.1 |  | 0.46 | RiPP | klebsidin | Klebsiella pneumoniae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00032_NZ_CABK.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 158,483 - 182,335 nt. (total: 23,853 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001929.1 |  | 0.29 | RiPP | WGK | Streptococcus ferus
BGC0001550.1 |  | 0.23 | RiPP | citrulassin D | Streptomyces katrae
BGC0001496.1 |  | 0.23 | RiPP | actinokineosin | Actinokineospora spheciospongiae
BGC0000602.1 |  | 0.23 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001552.1 |  | 0.23 | RiPP | citrulassin F | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001549.1 |  | 0.23 | RiPP | citrulassin B | Streptomyces aurantiacus JA 4570
BGC0001176.1 |  | 0.23 | RiPP | streptomonomicin | Streptomonospora alba
BGC0001634.1 |  | 0.23 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0001645.1 |  | 0.22 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0000601.1 |  | 0.21 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001929.1 |  | 0.62 | RiPP | WGK | Streptococcus ferus
BGC0001550.1 |  | 0.57 | RiPP | citrulassin D | Streptomyces katrae
BGC0001496.1 |  | 0.57 | RiPP | actinokineosin | Actinokineospora spheciospongiae
BGC0000602.1 |  | 0.56 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0001552.1 |  | 0.56 | RiPP | citrulassin F | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001549.1 |  | 0.56 | RiPP | citrulassin B | Streptomyces aurantiacus JA 4570
BGC0001176.1 |  | 0.56 | RiPP | streptomonomicin | Streptomonospora alba
BGC0001634.1 |  | 0.56 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0001645.1 |  | 0.55 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0000601.1 |  | 0.54 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00039_NZ_CABK.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 26,578 - 47,120 nt. (total: 20,543 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.16 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000539.1 |  | 0.16 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000626.1 |  | 0.16 | RiPP | thuricin | Bacillus thuringiensis
BGC0000563.1 |  | 0.16 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0001551.1 |  | 0.16 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000616.1 |  | 0.16 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0000551.1 |  | 0.16 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0001210.1 |  | 0.16 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001743.1 |  | 0.16 | RiPP | plantaricyclin | Lactobacillus plantarum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.47 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000539.1 |  | 0.47 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000626.1 |  | 0.47 | RiPP | thuricin | Bacillus thuringiensis
BGC0000563.1 |  | 0.47 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0001551.1 |  | 0.47 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000554.1 |  | 0.46 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000616.1 |  | 0.46 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0000551.1 |  | 0.46 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0001210.1 |  | 0.46 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001743.1 |  | 0.46 | RiPP | plantaricyclin | Lactobacillus plantarum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names