GCF_002159895.1_ASM215989v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_NFJN01000019 (original name was: NZ_NFJN01000019.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	53,188	71,249

NZ_NFJN01000024 (original name was: NZ_NFJN01000024.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	NRPS-like	1	25,641

NZ_NFJN01000053 (original name was: NZ_NFJN01000053.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	NRPS	1	3,259

NZ_NFJN01000006 (original name was: NZ_NFJN01000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 56.1	RiPP-like	121,697	132,509

NZ_NFJN01000060 (original name was: NZ_NFJN01000060.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 57.1	NRPS	1	1,135

Region	Type	From	To	Similarity
Region 11.1	terpene	53,188	71,249
Region 17.1	NRPS-like	1	25,641
Region 49.1	NRPS	1	3,259
Region 56.1	RiPP-like	121,697	132,509
Region 57.1	NRPS	1	1,135

No secondary metabolite regions were found in these records:: NZ_NFJN01000001 (original name was: NZ_NFJN01000001.1); NZ_NFJN01000010 (original name was: NZ_NFJN01000010.1); NZ_NFJN01000011 (original name was: NZ_NFJN01000011.1); NZ_NFJN01000012 (original name was: NZ_NFJN01000012.1); NZ_NFJN01000013 (original name was: NZ_NFJN01000013.1); NZ_NFJN01000014 (original name was: NZ_NFJN01000014.1); NZ_NFJN01000015 (original name was: NZ_NFJN01000015.1); NZ_NFJN01000016 (original name was: NZ_NFJN01000016.1); NZ_NFJN01000017 (original name was: NZ_NFJN01000017.1); NZ_NFJN01000018 (original name was: NZ_NFJN01000018.1); NZ_NFJN01000002 (original name was: NZ_NFJN01000002.1); NZ_NFJN01000020 (original name was: NZ_NFJN01000020.1); NZ_NFJN01000021 (original name was: NZ_NFJN01000021.1); NZ_NFJN01000022 (original name was: NZ_NFJN01000022.1); NZ_NFJN01000023 (original name was: NZ_NFJN01000023.1); NZ_NFJN01000025 (original name was: NZ_NFJN01000025.1); NZ_NFJN01000026 (original name was: NZ_NFJN01000026.1); NZ_NFJN01000027 (original name was: NZ_NFJN01000027.1); NZ_NFJN01000028 (original name was: NZ_NFJN01000028.1); NZ_NFJN01000029 (original name was: NZ_NFJN01000029.1); NZ_NFJN01000003 (original name was: NZ_NFJN01000003.1); NZ_NFJN01000030 (original name was: NZ_NFJN01000030.1); NZ_NFJN01000031 (original name was: NZ_NFJN01000031.1); NZ_NFJN01000032 (original name was: NZ_NFJN01000032.1); NZ_NFJN01000033 (original name was: NZ_NFJN01000033.1); NZ_NFJN01000034 (original name was: NZ_NFJN01000034.1); NZ_NFJN01000035 (original name was: NZ_NFJN01000035.1); NZ_NFJN01000036 (original name was: NZ_NFJN01000036.1); NZ_NFJN01000037 (original name was: NZ_NFJN01000037.1); NZ_NFJN01000038 (original name was: NZ_NFJN01000038.1); NZ_NFJN01000039 (original name was: NZ_NFJN01000039.1); NZ_NFJN01000004 (original name was: NZ_NFJN01000004.1); NZ_NFJN01000040 (original name was: NZ_NFJN01000040.1); NZ_NFJN01000041 (original name was: NZ_NFJN01000041.1); NZ_NFJN01000042 (original name was: NZ_NFJN01000042.1); NZ_NFJN01000043 (original name was: NZ_NFJN01000043.1); NZ_NFJN01000044 (original name was: NZ_NFJN01000044.1); NZ_NFJN01000045 (original name was: NZ_NFJN01000045.1); NZ_NFJN01000046 (original name was: NZ_NFJN01000046.1); NZ_NFJN01000047 (original name was: NZ_NFJN01000047.1); NZ_NFJN01000048 (original name was: NZ_NFJN01000048.1); NZ_NFJN01000049 (original name was: NZ_NFJN01000049.1); NZ_NFJN01000005 (original name was: NZ_NFJN01000005.1); NZ_NFJN01000050 (original name was: NZ_NFJN01000050.1); NZ_NFJN01000051 (original name was: NZ_NFJN01000051.1); NZ_NFJN01000052 (original name was: NZ_NFJN01000052.1); NZ_NFJN01000054 (original name was: NZ_NFJN01000054.1); NZ_NFJN01000055 (original name was: NZ_NFJN01000055.1); NZ_NFJN01000056 (original name was: NZ_NFJN01000056.1); NZ_NFJN01000057 (original name was: NZ_NFJN01000057.1); NZ_NFJN01000058 (original name was: NZ_NFJN01000058.1); NZ_NFJN01000059 (original name was: NZ_NFJN01000059.1); NZ_NFJN01000061 (original name was: NZ_NFJN01000061.1); NZ_NFJN01000062 (original name was: NZ_NFJN01000062.1); NZ_NFJN01000007 (original name was: NZ_NFJN01000007.1); NZ_NFJN01000008 (original name was: NZ_NFJN01000008.1); NZ_NFJN01000009 (original name was: NZ_NFJN01000009.1)

Compact view

c00011_NZ_NFJN.. - Region 1 - terpene

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Location: 53,188 - 71,249 nt. (total: 18,062 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.47	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000650.1	0.26	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000648.1	0.24	Terpene	carotenoid	Myxococcus xanthus
BGC0000656.1	0.23	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000640.1	0.21	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000630.1	0.20	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000637.1	0.20	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000646.1	0.20	Terpene	β-carotein	uncultured bacterium
BGC0000639.1	0.19	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000641.1	0.19	Terpene	carotenoid	Enterobacteriaceae bacterium DC416

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.77	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000650.1	0.59	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000648.1	0.57	Terpene	carotenoid	Myxococcus xanthus
BGC0000656.1	0.56	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000640.1	0.53	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000630.1	0.53	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000637.1	0.52	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000646.1	0.52	Terpene	β-carotein	uncultured bacterium
BGC0000639.1	0.51	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000641.1	0.51	Terpene	carotenoid	Enterobacteriaceae bacterium DC416

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00017_NZ_NFJN.. - Region 1 - NRPS-like

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Location: 1 - 25,641 nt. (total: 25,641 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000375.1	0.22	NRP	indigoidine	Streptomyces chromofuscus
BGC0001131.1	0.19	NRP	ambactin	Xenorhabdus miraniensis
BGC0001128.1	0.19	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.19	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000410.1	0.19	NRP	pseudomonine	Pseudomonas fluorescens
BGC0001758.1	0.18	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001900.1	0.18	NRP	fragin	Burkholderia cenocepacia H111
BGC0001135.1	0.18	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0000307.1	0.18	NRP	AbT1	Aureobasidium pullulans
BGC0001220.1	0.18	NRP	aculeacin A	Aspergillus japonicus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000375.1	0.55	NRP	indigoidine	Streptomyces chromofuscus
BGC0001131.1	0.52	NRP	ambactin	Xenorhabdus miraniensis
BGC0001128.1	0.51	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.51	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000410.1	0.51	NRP	pseudomonine	Pseudomonas fluorescens
BGC0001758.1	0.50	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001900.1	0.50	NRP	fragin	Burkholderia cenocepacia H111
BGC0001135.1	0.50	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0000307.1	0.50	NRP	AbT1	Aureobasidium pullulans
BGC0001220.1	0.49	NRP	aculeacin A	Aspergillus japonicus

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 25641:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg17_4

Search NORINE for peptide: strict or relaxed

AMP-binding (30..311): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

c00049_NZ_NFJN.. - Region 1 - NRPS

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Location: 1 - 3,259 nt. (total: 3,259 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000900.1	0.32	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.31	NRP	dimethylcoprogen	Alternaria alternata
BGC0001479.1	0.26	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000427.1	0.26	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.25	NRP	indigoidine	Streptomyces chromofuscus
BGC0001132.1	0.25	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001261.1	0.24	NRP	AM-toxin	Alternaria alternata
BGC0000348.1	0.24	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001135.1	0.24	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001128.1	0.24	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000900.1	0.65	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.65	NRP	dimethylcoprogen	Alternaria alternata
BGC0001479.1	0.60	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000427.1	0.60	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.58	NRP	indigoidine	Streptomyces chromofuscus
BGC0001132.1	0.58	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001261.1	0.58	NRP	AM-toxin	Alternaria alternata
BGC0000348.1	0.58	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001135.1	0.57	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001128.1	0.57	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 3259:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg49_1

Search NORINE for peptide: strict or relaxed

AMP-binding (36..407): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSmIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

c00056_NZ_NFJN.. - Region 1 - RiPP-like

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Location: 121,697 - 132,509 nt. (total: 10,813 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000883.1	0.15	Other	arginomycin	Streptomyces arginensis
BGC0000550.1	0.15	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000043.1	0.12	Polyketide	curacin A	Moorea producens 19L
BGC0000527.1	0.11	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000547.1	0.11	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000506.1	0.10	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0001789.1	0.10	RiPP	suicin 90-1330	Streptococcus suis
BGC0000536.1	0.10	RiPP	nisin Q	Lactococcus lactis
BGC0000535.1	0.10	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000556.1	0.10	RiPP	streptin	Streptococcus pyogenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000883.1	0.45	Other	arginomycin	Streptomyces arginensis
BGC0000550.1	0.44	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000043.1	0.40	Polyketide	curacin A	Moorea producens 19L
BGC0000527.1	0.39	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000547.1	0.38	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000506.1	0.36	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0001789.1	0.36	RiPP	suicin 90-1330	Streptococcus suis
BGC0000536.1	0.36	RiPP	nisin Q	Lactococcus lactis
BGC0000535.1	0.36	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000556.1	0.35	RiPP	streptin	Streptococcus pyogenes

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

c00057_NZ_NFJN.. - Region 1 - NRPS

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Location: 1 - 1,135 nt. (total: 1,135 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001844.1	0.23	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001132.1	0.22	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001833.1	0.22	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001135.1	0.22	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.21	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001261.1	0.21	NRP	AM-toxin	Alternaria alternata
BGC0000342.1	0.21	NRP	enniatin	Fusarium equiseti
BGC0001220.1	0.21	NRP	aculeacin A	Aspergillus japonicus
BGC0001641.1	0.20	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001825.1	0.20	NRP	xenematide	Xenorhabdus nematophila AN6/1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001844.1	0.56	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001132.1	0.56	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001833.1	0.55	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001135.1	0.55	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.54	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001261.1	0.54	NRP	AM-toxin	Alternaria alternata
BGC0000342.1	0.54	NRP	enniatin	Fusarium equiseti
BGC0001220.1	0.53	NRP	aculeacin A	Aspergillus japonicus
BGC0001641.1	0.53	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001825.1	0.53	NRP	xenematide	Xenorhabdus nematophila AN6/1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names