GCF_016128095.1_ASM1612809v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP066069.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	LAP	1,029,007	1,052,769	streptolysin S	RiPP:LAP	100%
Region 1.2	T3PKS	1,170,331	1,211,512
Region 1.3	RiPP-like	1,554,927	1,563,754
Region 1.4	RiPP-like	1,994,060	2,004,278

No secondary metabolite regions were found in these records:: NZ_CP066070.1

Compact view

NZ_CP066069.1 - Region 1 - LAP

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Location: 1,029,007 - 1,052,769 nt. (total: 23,763 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000566.1	0.61	RiPP	streptolysin S	Streptococcus pyogenes M1 GAS
BGC0001171.1	0.32	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0001173.1	0.31	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.31	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001170.1	0.29	RiPP	clostridiolysin S	Clostridium sporogenes ATCC 15579
BGC0000564.1	0.29	RiPP	clostridiolysin S	Clostridium botulinum A str. ATCC 3502
BGC0000568.1	0.27	RiPP	microcin B17	Escherichia coli
BGC0000565.1	0.17	RiPP	goadsporin	Streptomyces sp. TP-A0584
BGC0000605.1	0.16	RiPP	GE37468	Streptomyces sp. ATCC 55365
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000566.1	0.85	RiPP	streptolysin S	Streptococcus pyogenes M1 GAS
BGC0001171.1	0.66	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0001173.1	0.65	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.64	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001170.1	0.62	RiPP	clostridiolysin S	Clostridium sporogenes ATCC 15579
BGC0000564.1	0.62	RiPP	clostridiolysin S	Clostridium botulinum A str. ATCC 3502
BGC0000568.1	0.60	RiPP	microcin B17	Escherichia coli
BGC0000565.1	0.48	RiPP	goadsporin	Streptomyces sp. TP-A0584
BGC0000605.1	0.47	RiPP	GE37468	Streptomyces sp. ATCC 55365
BGC0001222.1	0.47	RiPP	acidocin B	Lactobacillus acidophilus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP066069.1 - Region 2 - T3PKS

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Location: 1,170,331 - 1,211,512 nt. (total: 41,182 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.17	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001521.1	0.17	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000294.1	0.16	NRP	acinetobactin	Acinetobacter baumannii
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001525.1	0.16	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000519.1	0.16	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.49	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001521.1	0.48	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000551.1	0.47	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000513.1	0.47	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000294.1	0.47	NRP	acinetobactin	Acinetobacter baumannii
BGC0000501.1	0.47	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001525.1	0.46	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.46	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000539.1	0.46	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000519.1	0.46	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP066069.1 - Region 3 - RiPP-like

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Location: 1,554,927 - 1,563,754 nt. (total: 8,828 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP066069.1 - Region 4 - RiPP-like

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Location: 1,994,060 - 2,004,278 nt. (total: 10,219 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001388.1	0.16	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.16	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.16	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0001862.1	0.15	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.15	RiPP	pallidocin	Aeribacillus pallidus
BGC0000558.1	0.15	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000624.1	0.15	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001209.1	0.11	RiPP	streptide	Streptococcus thermophilus LMD-9
BGC0000530.1	0.08	RiPP	mutacin B-Ny266	Streptococcus mutans N66

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001388.1	0.47	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.47	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.47	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000617.1	0.47	RiPP	coagulin	Bacillus coagulans
BGC0001862.1	0.46	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.46	RiPP	pallidocin	Aeribacillus pallidus
BGC0000558.1	0.45	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000624.1	0.45	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001209.1	0.39	RiPP	streptide	Streptococcus thermophilus LMD-9
BGC0000530.1	0.32	RiPP	mutacin B-Ny266	Streptococcus mutans N66

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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