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Overview
1.1
1.2
1.3

### Identified secondary metabolite regions using strictness 'relaxed'

c00001_NZ_JAUS.. (original name was: NZ_JAUSQM010000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | betalactone | 994,591 | 1,023,271 |
Region 2 | terpene | 2,864,688 | 2,885,611 | carotenoid | Terpene | 66%
Region 3 | betalactone | 3,503,590 | 3,530,508 |

c00001_NZ_JAUS.. - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 994,591 - 1,023,271 nt. (total: 28,681 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000234.1 |  | 0.19 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001168.1 |  | 0.17 | NRP | livipeptin | Streptomyces lividans 1326
BGC0001458.1 |  | 0.17 | Other (Aminocoumarin) | salinipostin G | Salinispora tropica CNB-440
BGC0002009.1 |  | 0.15 | Polyketide | kanglemycin A, kanglemycin V1, kanglemycin V2 | Amycolatopsis vancoresmycina
BGC0001150.1 |  | 0.14 | Polyketide | pamamycin-607 | Streptomyces alboniger
BGC0000597.1 |  | 0.14 | RiPP | SWA-2138 | Streptomyces sp. e14
BGC0000948.1 |  | 0.13 | Other | α-galactosylceramide | Bacteroides fragilis NCTC 9343
BGC0001627.1 |  | 0.12 | NRP | isonitrile lipopeptides | Mycobacterium tuberculosis H37Rv
BGC0000261.1 |  | 0.12 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001730.1 |  | 0.11 | Polyketide | paramagnetoquinone 1, paramagnetoquinone 2 | Actinoallomurus sp.

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000234.1 |  | 0.51 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001168.1 |  | 0.48 | NRP | livipeptin | Streptomyces lividans 1326
BGC0001458.1 |  | 0.48 | Other (Aminocoumarin) | salinipostin G | Salinispora tropica CNB-440
BGC0002009.1 |  | 0.44 | Polyketide | kanglemycin A, kanglemycin V1, kanglemycin V2 | Amycolatopsis vancoresmycina
BGC0001150.1 |  | 0.43 | Polyketide | pamamycin-607 | Streptomyces alboniger
BGC0000597.1 |  | 0.43 | RiPP | SWA-2138 | Streptomyces sp. e14
BGC0000948.1 |  | 0.42 | Other | α-galactosylceramide | Bacteroides fragilis NCTC 9343
BGC0001627.1 |  | 0.40 | NRP | isonitrile lipopeptides | Mycobacterium tuberculosis H37Rv
BGC0000261.1 |  | 0.40 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001730.1 |  | 0.39 | Polyketide | paramagnetoquinone 1, paramagnetoquinone 2 | Actinoallomurus sp.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_JAUS.. - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,864,688 - 2,885,611 nt. (total: 20,924 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.31 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000644.1 |  | 0.29 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000650.1 |  | 0.28 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000637.1 |  | 0.24 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0001778.1 |  | 0.20 | Other | showdomycin | Streptomyces showdoensis
BGC0000703.1 |  | 0.18 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000636.1 |  | 0.17 | Terpene | carotenoid | Brevibacterium linens
BGC0000813.1 |  | 0.17 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001465.1 |  | 0.16 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0001909.1 |  | 0.16 | Polyketide | strobilurin | Strobilurus tenacellus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.64 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000644.1 |  | 0.63 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000650.1 |  | 0.62 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000637.1 |  | 0.57 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0001778.1 |  | 0.53 | Other | showdomycin | Streptomyces showdoensis
BGC0000703.1 |  | 0.50 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000636.1 |  | 0.49 | Terpene | carotenoid | Brevibacterium linens
BGC0000813.1 |  | 0.48 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001465.1 |  | 0.47 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0001909.1 |  | 0.47 | Polyketide | strobilurin | Strobilurus tenacellus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_JAUS.. - Region 3 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,503,590 - 3,530,508 nt. (total: 26,919 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000888.1 |  | 0.28 | Other | bacilysin | Bacillus sp. CS93
BGC0001895.1 |  | 0.27 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0001444.1 |  | 0.27 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001538.1 |  | 0.27 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0002000.1 |  | 0.25 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570
BGC0001184.1 |  | 0.25 | Other | bacilysin | Bacillus velezensis FZB42
BGC0001197.1 |  | 0.24 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001334.1 |  | 0.23 | Alkaloid | caldoniamide A, cladoniamide B, cladoniamide C7, cladoniamide D, cladoniamide E, cladoniamide F, cladoniamide G | Streptomyces uncialis
BGC0000204.1 |  | 0.22 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000836.1 |  | 0.22 | Other | APE Ec | Escherichia coli CFT073

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000888.1 |  | 0.62 | Other | bacilysin | Bacillus sp. CS93
BGC0001895.1 |  | 0.61 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0001444.1 |  | 0.60 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001538.1 |  | 0.60 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0002000.1 |  | 0.59 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570
BGC0001184.1 |  | 0.58 | Other | bacilysin | Bacillus velezensis FZB42
BGC0001197.1 |  | 0.57 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001334.1 |  | 0.56 | Alkaloid | caldoniamide A, cladoniamide B, cladoniamide C7, cladoniamide D, cladoniamide E, cladoniamide F, cladoniamide G | Streptomyces uncialis
BGC0000204.1 |  | 0.55 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0000836.1 |  | 0.54 | Other | APE Ec | Escherichia coli CFT073

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names