Select genomic region:
Overview
34.1
56.1
142.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00034_NZ_CABK.. (original name was: NZ_CABKTP010000034.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 34.1 | thiopeptide,LAP | 1 | 22,478 |

c00056_NZ_CABK.. (original name was: NZ_CABKTP010000056.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 56.1 | ranthipeptide | 1 | 11,713 |

c00142_NZ_CABK.. (original name was: NZ_CABKTP010000142.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 142.1 | cyclic-lactone-autoinducer | 80,696 | 101,250 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 34.1 | thiopeptide,LAP | 1 | 22,478 |
Region 56.1 | ranthipeptide | 1 | 11,713 |
Region 142.1 | cyclic-lactone-autoinducer | 80,696 | 101,250 |

No secondary metabolite regions were found in these records:
  c00001_NZ_CABK.. (original name was: NZ_CABKTP010000001.1)
  c00002_NZ_CABK.. (original name was: NZ_CABKTP010000002.1)
  c00003_NZ_CABK.. (original name was: NZ_CABKTP010000003.1)
  c00004_NZ_CABK.. (original name was: NZ_CABKTP010000004.1)
  c00005_NZ_CABK.. (original name was: NZ_CABKTP010000005.1)
  c00006_NZ_CABK.. (original name was: NZ_CABKTP010000006.1)
  c00007_NZ_CABK.. (original name was: NZ_CABKTP010000007.1)
  c00008_NZ_CABK.. (original name was: NZ_CABKTP010000008.1)
  c00009_NZ_CABK.. (original name was: NZ_CABKTP010000009.1)
  c00010_NZ_CABK.. (original name was: NZ_CABKTP010000010.1)
  c00011_NZ_CABK.. (original name was: NZ_CABKTP010000011.1)
  c00012_NZ_CABK.. (original name was: NZ_CABKTP010000012.1)
  c00013_NZ_CABK.. (original name was: NZ_CABKTP010000013.1)
  c00014_NZ_CABK.. (original name was: NZ_CABKTP010000014.1)
  c00015_NZ_CABK.. (original name was: NZ_CABKTP010000015.1)
  c00016_NZ_CABK.. (original name was: NZ_CABKTP010000016.1)
  c00017_NZ_CABK.. (original name was: NZ_CABKTP010000017.1)
  c00018_NZ_CABK.. (original name was: NZ_CABKTP010000018.1)
  c00019_NZ_CABK.. (original name was: NZ_CABKTP010000019.1)
  c00020_NZ_CABK.. (original name was: NZ_CABKTP010000020.1)
  c00021_NZ_CABK.. (original name was: NZ_CABKTP010000021.1)
  c00022_NZ_CABK.. (original name was: NZ_CABKTP010000022.1)
  c00023_NZ_CABK.. (original name was: NZ_CABKTP010000023.1)
  c00024_NZ_CABK.. (original name was: NZ_CABKTP010000024.1)
  c00025_NZ_CABK.. (original name was: NZ_CABKTP010000025.1)
  c00026_NZ_CABK.. (original name was: NZ_CABKTP010000026.1)
  c00027_NZ_CABK.. (original name was: NZ_CABKTP010000027.1)
  c00028_NZ_CABK.. (original name was: NZ_CABKTP010000028.1)
  c00029_NZ_CABK.. (original name was: NZ_CABKTP010000029.1)
  c00030_NZ_CABK.. (original name was: NZ_CABKTP010000030.1)
  c00031_NZ_CABK.. (original name was: NZ_CABKTP010000031.1)
  c00032_NZ_CABK.. (original name was: NZ_CABKTP010000032.1)
  c00033_NZ_CABK.. (original name was: NZ_CABKTP010000033.1)
  c00035_NZ_CABK.. (original name was: NZ_CABKTP010000035.1)
  c00036_NZ_CABK.. (original name was: NZ_CABKTP010000036.1)
  c00037_NZ_CABK.. (original name was: NZ_CABKTP010000037.1)
  c00038_NZ_CABK.. (original name was: NZ_CABKTP010000038.1)
  c00039_NZ_CABK.. (original name was: NZ_CABKTP010000039.1)
  c00040_NZ_CABK.. (original name was: NZ_CABKTP010000040.1)
  c00041_NZ_CABK.. (original name was: NZ_CABKTP010000041.1)
  c00042_NZ_CABK.. (original name was: NZ_CABKTP010000042.1)
  c00043_NZ_CABK.. (original name was: NZ_CABKTP010000043.1)
  c00044_NZ_CABK.. (original name was: NZ_CABKTP010000044.1)
  c00045_NZ_CABK.. (original name was: NZ_CABKTP010000045.1)
  c00046_NZ_CABK.. (original name was: NZ_CABKTP010000046.1)
  c00047_NZ_CABK.. (original name was: NZ_CABKTP010000047.1)
  c00048_NZ_CABK.. (original name was: NZ_CABKTP010000048.1)
  c00049_NZ_CABK.. (original name was: NZ_CABKTP010000049.1)
  c00050_NZ_CABK.. (original name was: NZ_CABKTP010000050.1)
  c00051_NZ_CABK.. (original name was: NZ_CABKTP010000051.1)
  c00052_NZ_CABK.. (original name was: NZ_CABKTP010000052.1)
  c00053_NZ_CABK.. (original name was: NZ_CABKTP010000053.1)
  c00054_NZ_CABK.. (original name was: NZ_CABKTP010000054.1)
  c00055_NZ_CABK.. (original name was: NZ_CABKTP010000055.1)
  c00057_NZ_CABK.. (original name was: NZ_CABKTP010000057.1)
  c00058_NZ_CABK.. (original name was: NZ_CABKTP010000058.1)
  c00059_NZ_CABK.. (original name was: NZ_CABKTP010000059.1)
  c00060_NZ_CABK.. (original name was: NZ_CABKTP010000060.1)
  c00061_NZ_CABK.. (original name was: NZ_CABKTP010000061.1)
  c00062_NZ_CABK.. (original name was: NZ_CABKTP010000062.1)
  c00063_NZ_CABK.. (original name was: NZ_CABKTP010000063.1)
  c00064_NZ_CABK.. (original name was: NZ_CABKTP010000064.1)
  c00065_NZ_CABK.. (original name was: NZ_CABKTP010000065.1)
  c00066_NZ_CABK.. (original name was: NZ_CABKTP010000066.1)
  c00067_NZ_CABK.. (original name was: NZ_CABKTP010000067.1)
  c00068_NZ_CABK.. (original name was: NZ_CABKTP010000068.1)
  c00069_NZ_CABK.. (original name was: NZ_CABKTP010000069.1)
  c00070_NZ_CABK.. (original name was: NZ_CABKTP010000070.1)
  c00071_NZ_CABK.. (original name was: NZ_CABKTP010000071.1)
  c00072_NZ_CABK.. (original name was: NZ_CABKTP010000072.1)
  c00073_NZ_CABK.. (original name was: NZ_CABKTP010000073.1)
  c00074_NZ_CABK.. (original name was: NZ_CABKTP010000074.1)
  c00075_NZ_CABK.. (original name was: NZ_CABKTP010000075.1)
  c00076_NZ_CABK.. (original name was: NZ_CABKTP010000076.1)
  c00077_NZ_CABK.. (original name was: NZ_CABKTP010000077.1)
  c00078_NZ_CABK.. (original name was: NZ_CABKTP010000078.1)
  c00079_NZ_CABK.. (original name was: NZ_CABKTP010000079.1)
  c00080_NZ_CABK.. (original name was: NZ_CABKTP010000080.1)
  c00081_NZ_CABK.. (original name was: NZ_CABKTP010000081.1)
  c00082_NZ_CABK.. (original name was: NZ_CABKTP010000082.1)
  c00083_NZ_CABK.. (original name was: NZ_CABKTP010000083.1)
  c00084_NZ_CABK.. (original name was: NZ_CABKTP010000084.1)
  c00085_NZ_CABK.. (original name was: NZ_CABKTP010000085.1)
  c00086_NZ_CABK.. (original name was: NZ_CABKTP010000086.1)
  c00087_NZ_CABK.. (original name was: NZ_CABKTP010000087.1)
  c00088_NZ_CABK.. (original name was: NZ_CABKTP010000088.1)
  c00089_NZ_CABK.. (original name was: NZ_CABKTP010000089.1)
  c00090_NZ_CABK.. (original name was: NZ_CABKTP010000090.1)
  c00091_NZ_CABK.. (original name was: NZ_CABKTP010000091.1)
  c00092_NZ_CABK.. (original name was: NZ_CABKTP010000092.1)
  c00093_NZ_CABK.. (original name was: NZ_CABKTP010000093.1)
  c00094_NZ_CABK.. (original name was: NZ_CABKTP010000094.1)
  c00095_NZ_CABK.. (original name was: NZ_CABKTP010000095.1)
  c00096_NZ_CABK.. (original name was: NZ_CABKTP010000096.1)
  c00097_NZ_CABK.. (original name was: NZ_CABKTP010000097.1)
  c00098_NZ_CABK.. (original name was: NZ_CABKTP010000098.1)
  c00099_NZ_CABK.. (original name was: NZ_CABKTP010000099.1)
  c00100_NZ_CABK.. (original name was: NZ_CABKTP010000100.1)
  c00101_NZ_CABK.. (original name was: NZ_CABKTP010000101.1)
  c00102_NZ_CABK.. (original name was: NZ_CABKTP010000102.1)
  c00103_NZ_CABK.. (original name was: NZ_CABKTP010000103.1)
  c00104_NZ_CABK.. (original name was: NZ_CABKTP010000104.1)
  c00105_NZ_CABK.. (original name was: NZ_CABKTP010000105.1)
  c00106_NZ_CABK.. (original name was: NZ_CABKTP010000106.1)
  c00107_NZ_CABK.. (original name was: NZ_CABKTP010000107.1)
  c00108_NZ_CABK.. (original name was: NZ_CABKTP010000108.1)
  c00109_NZ_CABK.. (original name was: NZ_CABKTP010000109.1)
  c00110_NZ_CABK.. (original name was: NZ_CABKTP010000110.1)
  c00111_NZ_CABK.. (original name was: NZ_CABKTP010000111.1)
  c00112_NZ_CABK.. (original name was: NZ_CABKTP010000112.1)
  c00113_NZ_CABK.. (original name was: NZ_CABKTP010000113.1)
  c00114_NZ_CABK.. (original name was: NZ_CABKTP010000114.1)
  c00115_NZ_CABK.. (original name was: NZ_CABKTP010000115.1)
  c00116_NZ_CABK.. (original name was: NZ_CABKTP010000116.1)
  c00117_NZ_CABK.. (original name was: NZ_CABKTP010000117.1)
  c00118_NZ_CABK.. (original name was: NZ_CABKTP010000118.1)
  c00119_NZ_CABK.. (original name was: NZ_CABKTP010000119.1)
  c00120_NZ_CABK.. (original name was: NZ_CABKTP010000120.1)
  c00121_NZ_CABK.. (original name was: NZ_CABKTP010000121.1)
  c00122_NZ_CABK.. (original name was: NZ_CABKTP010000122.1)
  c00123_NZ_CABK.. (original name was: NZ_CABKTP010000123.1)
  c00124_NZ_CABK.. (original name was: NZ_CABKTP010000124.1)
  c00125_NZ_CABK.. (original name was: NZ_CABKTP010000125.1)
  c00126_NZ_CABK.. (original name was: NZ_CABKTP010000126.1)
  c00127_NZ_CABK.. (original name was: NZ_CABKTP010000127.1)
  c00128_NZ_CABK.. (original name was: NZ_CABKTP010000128.1)
  c00129_NZ_CABK.. (original name was: NZ_CABKTP010000129.1)
  c00130_NZ_CABK.. (original name was: NZ_CABKTP010000130.1)
  c00131_NZ_CABK.. (original name was: NZ_CABKTP010000131.1)
  c00132_NZ_CABK.. (original name was: NZ_CABKTP010000132.1)
  c00133_NZ_CABK.. (original name was: NZ_CABKTP010000133.1)
  c00134_NZ_CABK.. (original name was: NZ_CABKTP010000134.1)
  c00135_NZ_CABK.. (original name was: NZ_CABKTP010000135.1)
  c00136_NZ_CABK.. (original name was: NZ_CABKTP010000136.1)
  c00137_NZ_CABK.. (original name was: NZ_CABKTP010000137.1)
  c00138_NZ_CABK.. (original name was: NZ_CABKTP010000138.1)
  c00139_NZ_CABK.. (original name was: NZ_CABKTP010000139.1)
  c00140_NZ_CABK.. (original name was: NZ_CABKTP010000140.1)
  c00141_NZ_CABK.. (original name was: NZ_CABKTP010000141.1)
  c00143_NZ_CABK.. (original name was: NZ_CABKTP010000143.1)
  c00144_NZ_CABK.. (original name was: NZ_CABKTP010000144.1)
  c00145_NZ_CABK.. (original name was: NZ_CABKTP010000145.1)
  c00146_NZ_CABK.. (original name was: NZ_CABKTP010000146.1)
  c00147_NZ_CABK.. (original name was: NZ_CABKTP010000147.1)
  c00148_NZ_CABK.. (original name was: NZ_CABKTP010000148.1)
  c00149_NZ_CABK.. (original name was: NZ_CABKTP010000149.1)
  c00150_NZ_CABK.. (original name was: NZ_CABKTP010000150.1)
  c00151_NZ_CABK.. (original name was: NZ_CABKTP010000151.1)
  c00152_NZ_CABK.. (original name was: NZ_CABKTP010000152.1)
  c00153_NZ_CABK.. (original name was: NZ_CABKTP010000153.1)
  c00154_NZ_CABK.. (original name was: NZ_CABKTP010000154.1)
  c00155_NZ_CABK.. (original name was: NZ_CABKTP010000155.1)
  c00156_NZ_CABK.. (original name was: NZ_CABKTP010000156.1)
  c00157_NZ_CABK.. (original name was: NZ_CABKTP010000157.1)
  c00158_NZ_CABK.. (original name was: NZ_CABKTP010000158.1)
  c00159_NZ_CABK.. (original name was: NZ_CABKTP010000159.1)
  c00160_NZ_CABK.. (original name was: NZ_CABKTP010000160.1)
  c00161_NZ_CABK.. (original name was: NZ_CABKTP010000161.1)

Compact view
c00034_NZ_CABK.. - Region 1 - LAP,thiopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 22,478 nt. (total: 22,478 nt) Show pHMM detection rules used
Region on contig edge.
thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Thiopeptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | LAP | thiopeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0001171.1 |  |  | 0.66 | RiPP | listeriolysin S | Listeria monocytogenes serotype 4b str. F2365
BGC0000569.1 |  |  | 0.55 | RiPP | plantazolicin | Bacillus velezensis FZB42
BGC0000568.1 |  |  | 0.51 | RiPP | microcin B17 | Escherichia coli
BGC0000566.1 |  |  | 0.50 | RiPP | streptolysin S | Streptococcus pyogenes M1 GAS
BGC0000564.1 |  |  | 0.46 | RiPP | clostridiolysin S | Clostridium botulinum A str. ATCC 3502
BGC0001170.1 |  |  | 0.46 | RiPP | clostridiolysin S | Clostridium sporogenes ATCC 15579
BGC0000605.1 |  |  | 0.42 | RiPP | GE37468 | Streptomyces sp. ATCC 55365
BGC0000601.1 |  |  | 0.41 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000600.1 |  |  | 0.40 | RiPP | thurincin H | Bacillus thuringiensis
BGC0000602.1 |  |  | 0.38 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001171.1 |  | 0.66 | RiPP | listeriolysin S | Listeria monocytogenes serotype 4b str. F2365
BGC0000569.1 |  | 0.61 | RiPP | plantazolicin | Bacillus velezensis FZB42
BGC0000568.1 |  | 0.59 | RiPP | microcin B17 | Escherichia coli
BGC0000566.1 |  | 0.59 | RiPP | streptolysin S | Streptococcus pyogenes M1 GAS
BGC0000564.1 |  | 0.56 | RiPP | clostridiolysin S | Clostridium botulinum A str. ATCC 3502
BGC0001170.1 |  | 0.56 | RiPP | clostridiolysin S | Clostridium sporogenes ATCC 15579
BGC0000605.1 |  | 0.54 | RiPP | GE37468 | Streptomyces sp. ATCC 55365
BGC0000601.1 |  | 0.53 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000600.1 |  | 0.52 | RiPP | thurincin H | Bacillus thuringiensis
BGC0000602.1 |  | 0.51 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Thiopeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash. Predicted tail sequences are also shown.
No core peptides found.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Thiopeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists its possible molecular weights and the scores for cleavage site prediction and RODEO. If relevant, other features, such as macrocycle and amidation, will also be listed.
No core peptides found.
c00056_NZ_CABK.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 11,713 nt. (total: 11,713 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001387.1 |  | 0.19 | Other | nucleocidin | Streptomyces calvus
BGC0000599.1 |  | 0.14 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000466.1 |  | 0.13 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0000604.1 |  | 0.07 | RiPP | GE2270A | Nonomuraea sp. WU8817
BGC0001591.1 |  | 0.07 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.07 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001155.1 |  | 0.07 | RiPP | GE2270 | Planobispora rosea
BGC0000027.1 |  | 0.06 | Polyketide | ankaflavin, monascin, rubropunctatine, monascorubrin | Monascus pilosus
BGC0001190.1 |  | 0.05 | Polyketide | fusaric acid | Fusarium verticillioides 7600
BGC0001751.1 |  | 0.03 | NRP, Polyketide | pyxipyrrolone A, pyxipyrrolone B | Pyxidicoccus sp. MCy9557

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001387.1 |  | 0.51 | Other | nucleocidin | Streptomyces calvus
BGC0000599.1 |  | 0.44 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000466.1 |  | 0.41 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0000604.1 |  | 0.28 | RiPP | GE2270A | Nonomuraea sp. WU8817
BGC0001591.1 |  | 0.28 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.28 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001155.1 |  | 0.27 | RiPP | GE2270 | Planobispora rosea
BGC0000027.1 |  | 0.26 | Polyketide | ankaflavin, monascin, rubropunctatine, monascorubrin | Monascus pilosus
BGC0001190.1 |  | 0.23 | Polyketide | fusaric acid | Fusarium verticillioides 7600
BGC0001751.1 |  | 0.16 | NRP, Polyketide | pyxipyrrolone A, pyxipyrrolone B | Pyxidicoccus sp. MCy9557

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00142_NZ_CABK.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 80,696 - 101,250 nt. (total: 20,555 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001210.1 |  | 0.18 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001779.1 |  | 0.17 | RiPP | siamycin | Streptomyces nodosus
BGC0001579.1 |  | 0.17 | RiPP | duramycin | Streptomyces cinnamoneus
BGC0000616.1 |  | 0.17 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0000563.1 |  | 0.17 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000539.1 |  | 0.17 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000626.1 |  | 0.17 | RiPP | thuricin | Bacillus thuringiensis
BGC0000486.1 |  | 0.17 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000775.1 |  | 0.16 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000736.1 |  | 0.16 | Saccharide | capsular polysaccharide | Mannheimia haemolytica

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001210.1 |  | 0.49 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001779.1 |  | 0.49 | RiPP | siamycin | Streptomyces nodosus
BGC0001579.1 |  | 0.49 | RiPP | duramycin | Streptomyces cinnamoneus
BGC0000616.1 |  | 0.48 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0000563.1 |  | 0.48 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000539.1 |  | 0.48 | RiPP | nukacin ISK-1 | Staphylococcus warneri
BGC0000626.1 |  | 0.48 | RiPP | thuricin | Bacillus thuringiensis
BGC0000486.1 |  | 0.48 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000775.1 |  | 0.47 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000736.1 |  | 0.47 | Saccharide | capsular polysaccharide | Mannheimia haemolytica

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names