GCF_000499525.1_Clostridium_dakarense_01_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_HG529229.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	cyclic-lactone-autoinducer	41,439	57,645

NZ_HG529356.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	cyclic-lactone-autoinducer	164	20,793

NZ_HG529402.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 171.1	ranthipeptide	4,987	24,360

Region	Type	From	To	Similarity
Region 6.1	cyclic-lactone-autoinducer	41,439	57,645
Region 126.1	cyclic-lactone-autoinducer	164	20,793
Region 171.1	ranthipeptide	4,987	24,360

No secondary metabolite regions were found in these records:: NZ_HG529224.1; NZ_HG529225.1; NZ_HG529226.1; NZ_HG529227.1; NZ_HG529228.1; NZ_HG529230.1; NZ_HG529231.1; NZ_HG529232.1; NZ_HG529233.1; NZ_HG529234.1; NZ_HG529235.1; NZ_HG529236.1; NZ_HG529237.1; NZ_HG529238.1; NZ_HG529239.1; NZ_HG529241.1; NZ_HG529242.1; NZ_HG529243.1; NZ_HG529244.1; NZ_HG529245.1; NZ_HG529246.1; NZ_HG529247.1; NZ_HG529248.1; NZ_HG529249.1; NZ_HG529250.1; NZ_HG529251.1; NZ_HG529252.1; NZ_HG529253.1; NZ_HG529254.1; NZ_HG529255.1; NZ_HG529256.1; NZ_HG529257.1; NZ_HG529258.1; NZ_HG529259.1; NZ_HG529260.1; NZ_HG529261.1; NZ_HG529262.1; NZ_HG529263.1; NZ_HG529265.1; NZ_HG529266.1; NZ_HG529267.1; NZ_HG529268.1; NZ_HG529269.1; NZ_HG529270.1; NZ_HG529271.1; NZ_HG529272.1; NZ_HG529273.1; NZ_HG529274.1; NZ_HG529275.1; NZ_HG529276.1; NZ_HG529277.1; NZ_HG529278.1; NZ_HG529279.1; NZ_HG529280.1; NZ_HG529281.1; NZ_HG529282.1; NZ_HG529283.1; NZ_HG529284.1; NZ_HG529285.1; NZ_HG529287.1; NZ_HG529288.1; NZ_HG529289.1; NZ_HG529290.1; NZ_HG529291.1; NZ_HG529292.1; NZ_HG529293.1; NZ_HG529294.1; NZ_HG529295.1; NZ_HG529296.1; NZ_HG529297.1; NZ_HG529298.1; NZ_HG529299.1; NZ_HG529300.1; NZ_HG529301.1; NZ_HG529302.1; NZ_HG529303.1; NZ_HG529304.1; NZ_HG529305.1; NZ_HG529306.1; NZ_HG529307.1; NZ_HG529308.1; NZ_HG529309.1; NZ_HG529310.1; NZ_HG529311.1; NZ_HG529312.1; NZ_HG529314.1; NZ_HG529315.1; NZ_HG529316.1; NZ_HG529317.1; NZ_HG529318.1; NZ_HG529321.1; NZ_HG529322.1; NZ_HG529323.1; NZ_HG529324.1; NZ_HG529325.1; NZ_HG529326.1; NZ_HG529327.1; NZ_HG529328.1; NZ_HG529329.1; NZ_HG529330.1; NZ_HG529331.1; NZ_HG529332.1; NZ_HG529333.1; NZ_HG529334.1; NZ_HG529335.1; NZ_HG529336.1; NZ_HG529337.1; NZ_HG529339.1; NZ_HG529340.1; NZ_HG529341.1; NZ_HG529342.1; NZ_HG529343.1; NZ_HG529344.1; NZ_HG529345.1; NZ_HG529346.1; NZ_HG529347.1; NZ_HG529348.1; NZ_HG529349.1; NZ_HG529350.1; NZ_HG529351.1; NZ_HG529352.1; NZ_HG529353.1; NZ_HG529354.1; NZ_HG529355.1; NZ_HG529357.1; NZ_HG529358.1; NZ_HG529359.1; NZ_HG529360.1; NZ_HG529361.1; NZ_HG529362.1; NZ_HG529363.1; NZ_HG529364.1; NZ_HG529365.1; NZ_HG529366.1; NZ_HG529367.1; NZ_HG529368.1; NZ_HG529369.1; NZ_HG529370.1; NZ_HG529371.1; NZ_HG529372.1; NZ_HG529374.1; NZ_HG529375.1; NZ_HG529376.1; NZ_HG529377.1; NZ_HG529378.1; NZ_HG529379.1; NZ_HG529380.1; NZ_HG529381.1; NZ_HG529382.1; NZ_HG529383.1; NZ_HG529384.1; NZ_HG529385.1; NZ_HG529386.1; NZ_HG529387.1; NZ_HG529388.1; NZ_HG529389.1; NZ_HG529390.1; NZ_HG529391.1; NZ_HG529392.1; NZ_HG529393.1; NZ_HG529394.1; NZ_HG529395.1; NZ_HG529396.1; NZ_HG529397.1; NZ_HG529398.1; NZ_HG529399.1; NZ_HG529400.1; NZ_HG529401.1; NZ_HG529403.1; NZ_HG529404.1; NZ_HG529405.1; NZ_HG529406.1; NZ_HG529407.1; NZ_HG529408.1; NZ_HG529409.1; NZ_HG529410.1; NZ_HG529411.1; NZ_HG529412.1; NZ_HG529413.1; NZ_HG529414.1; NZ_HG529415.1; NZ_HG529416.1; NZ_HG529417.1; NZ_HG529418.1; NZ_HG529419.1; NZ_HG529420.1; NZ_HG529421.1; NZ_HG529422.1; NZ_HG529423.1; NZ_HG529424.1; NZ_HG529425.1; NZ_HG529426.1; NZ_HG529427.1; NZ_HG529428.1; NZ_HG529429.1; NZ_HG529430.1; NZ_HG529431.1; NZ_HG529432.1; NZ_HG529433.1; NZ_HG529434.1; NZ_HG529435.1; NZ_HG529436.1; NZ_HG529437.1; NZ_HG529438.1; NZ_HG529439.1; NZ_HG529440.1; NZ_HG529441.1; NZ_HG529442.1; NZ_HG529443.1; NZ_HG529445.1; NZ_HG529446.1; NZ_HG529447.1; NZ_HG529448.1

Compact view

NZ_HG529229.1 - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

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Location: 41,439 - 57,645 nt. (total: 16,207 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000928.1	0.16	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.16	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000883.1	0.14	Other	arginomycin	Streptomyces arginensis
BGC0000515.1	0.13	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000506.1	0.12	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000043.1	0.12	Polyketide	curacin A	Moorea producens 19L
BGC0000556.1	0.12	RiPP	streptin	Streptococcus pyogenes
BGC0000527.1	0.12	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0002026.1	0.11	NRP	thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2	Jahnella sp. MSr9139

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000928.1	0.47	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.47	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000703.1	0.44	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000883.1	0.43	Other	arginomycin	Streptomyces arginensis
BGC0000515.1	0.41	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000506.1	0.40	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000043.1	0.40	Polyketide	curacin A	Moorea producens 19L
BGC0000556.1	0.40	RiPP	streptin	Streptococcus pyogenes
BGC0000527.1	0.39	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0002026.1	0.38	NRP	thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2	Jahnella sp. MSr9139

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_HG529356.1 - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

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Location: 164 - 20,793 nt. (total: 20,630 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000804.1	0.13	Saccharide	acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03	Streptomyces coelicoflavus ZG0656
BGC0001796.1	0.12	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0000388.1	0.08	NRP	mannopeptimycin	Streptomyces hygroscopicus
BGC0000432.1	0.07	NRP	streptothricin	Streptomyces rochei
BGC0001379.1	0.07	NRP	BD-12	Streptomyces luteocolor
BGC0000957.1	0.07	NRP, Polyketide	mycotrienin I	Streptomyces sp. XZQH13
BGC0000268.1	0.06	Polyketide	Sch-47554, Sch-47555	Streptomyces sp. SCC 2136
BGC0001406.1	0.06	NRP	telomycin	Streptomyces canus
BGC0001703.1	0.06	Other	nocuolin A	Nostoc sp. CCAP 1453/38
BGC0001093.1	0.06	NRP, Polyketide	disorazol A	Sorangium cellulosum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000804.1	0.42	Saccharide	acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03	Streptomyces coelicoflavus ZG0656
BGC0001796.1	0.40	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0000388.1	0.30	NRP	mannopeptimycin	Streptomyces hygroscopicus
BGC0000432.1	0.28	NRP	streptothricin	Streptomyces rochei
BGC0001379.1	0.27	NRP	BD-12	Streptomyces luteocolor
BGC0000957.1	0.27	NRP, Polyketide	mycotrienin I	Streptomyces sp. XZQH13
BGC0000268.1	0.27	Polyketide	Sch-47554, Sch-47555	Streptomyces sp. SCC 2136
BGC0001406.1	0.25	NRP	telomycin	Streptomyces canus
BGC0001703.1	0.25	Other	nocuolin A	Nostoc sp. CCAP 1453/38
BGC0001093.1	0.25	NRP, Polyketide	disorazol A	Sorangium cellulosum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

NZ_HG529402.1 - Region 1 - ranthipeptide

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Location: 4,987 - 24,360 nt. (total: 19,374 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.18	Other	nucleocidin	Streptomyces calvus
BGC0001120.1	0.14	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001935.1	0.12	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.12	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.11	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001591.1	0.07	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.07	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000027.1	0.06	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus
BGC0001943.1	0.05	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.05	NRP	vioprolide A	Cystobacter sp.

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.50	Other	nucleocidin	Streptomyces calvus
BGC0001120.1	0.44	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001935.1	0.39	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.39	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.37	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001591.1	0.28	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.28	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000027.1	0.26	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus
BGC0001943.1	0.24	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.24	NRP	vioprolide A	Cystobacter sp.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names