Select genomic region:
Overview
1.1
2.1
3.1
9.1
12.1
13.1
20.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00001_NZ_CADI.. (original name was: NZ_CADIKT010000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | NAPAA | 900,367 | 934,338 |

c00002_NZ_CADI.. (original name was: NZ_CADIKT010000002.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | betalactone | 722,959 | 745,528 |

c00003_NZ_CADI.. (original name was: NZ_CADIKT010000003.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | phosphonate | 613,692 | 654,564 | salecan | Saccharide | 10%

c00009_NZ_CADI.. (original name was: NZ_CADIKT010000009.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | siderophore | 55,408 | 67,261 | desferrioxamin B / desferrioxamine E | Other | 50%

c00012_NZ_CADI.. (original name was: NZ_CADIKT010000012.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | resorcinol | 89,744 | 131,675 | O-antigen | Saccharide | 14%

c00013_NZ_CADI.. (original name was: NZ_CADIKT010000013.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | terpene | 129,940 | 151,653 |

c00020_NZ_CADI.. (original name was: NZ_CADIKT010000020.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 20.1 | ectoine | 46,832 | 57,236 | ectoine | Other | 75%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | NAPAA | 900,367 | 934,338 |
Region 2.1 | betalactone | 722,959 | 745,528 |
Region 3.1 | phosphonate | 613,692 | 654,564 | salecan | Saccharide | 10%
Region 9.1 | siderophore | 55,408 | 67,261 | desferrioxamin B / desferrioxamine E | Other | 50%
Region 12.1 | resorcinol | 89,744 | 131,675 | O-antigen | Saccharide | 14%
Region 13.1 | terpene | 129,940 | 151,653 |
Region 20.1 | ectoine | 46,832 | 57,236 | ectoine | Other | 75%

No secondary metabolite regions were found in these records:
  c00004_NZ_CADI.. (original name was: NZ_CADIKT010000004.1)
  c00005_NZ_CADI.. (original name was: NZ_CADIKT010000005.1)
  c00006_NZ_CADI.. (original name was: NZ_CADIKT010000006.1)
  c00007_NZ_CADI.. (original name was: NZ_CADIKT010000007.1)
  c00008_NZ_CADI.. (original name was: NZ_CADIKT010000008.1)
  c00010_NZ_CADI.. (original name was: NZ_CADIKT010000010.1)
  c00011_NZ_CADI.. (original name was: NZ_CADIKT010000011.1)
  c00014_NZ_CADI.. (original name was: NZ_CADIKT010000014.1)
  c00015_NZ_CADI.. (original name was: NZ_CADIKT010000015.1)
  c00016_NZ_CADI.. (original name was: NZ_CADIKT010000016.1)
  c00017_NZ_CADI.. (original name was: NZ_CADIKT010000017.1)
  c00018_NZ_CADI.. (original name was: NZ_CADIKT010000018.1)
  c00019_NZ_CADI.. (original name was: NZ_CADIKT010000019.1)
  c00021_NZ_CADI.. (original name was: NZ_CADIKT010000021.1)
  c00022_NZ_CADI.. (original name was: NZ_CADIKT010000022.1)
  c00023_NZ_CADI.. (original name was: NZ_CADIKT010000023.1)
  c00024_NZ_CADI.. (original name was: NZ_CADIKT010000024.1)
  c00025_NZ_CADI.. (original name was: NZ_CADIKT010000025.1)
  c00026_NZ_CADI.. (original name was: NZ_CADIKT010000026.1)
  c00027_NZ_CADI.. (original name was: NZ_CADIKT010000027.1)
  c00028_NZ_CADI.. (original name was: NZ_CADIKT010000028.1)
  c00029_NZ_CADI.. (original name was: NZ_CADIKT010000029.1)
  c00030_NZ_CADI.. (original name was: NZ_CADIKT010000030.1)
  c00031_NZ_CADI.. (original name was: NZ_CADIKT010000031.1)
  c00032_NZ_CADI.. (original name was: NZ_CADIKT010000032.1)
  c00033_NZ_CADI.. (original name was: NZ_CADIKT010000033.1)
  c00034_NZ_CADI.. (original name was: NZ_CADIKT010000034.1)
  c00035_NZ_CADI.. (original name was: NZ_CADIKT010000035.1)
  c00036_NZ_CADI.. (original name was: NZ_CADIKT010000036.1)
  c00037_NZ_CADI.. (original name was: NZ_CADIKT010000037.1)
  c00038_NZ_CADI.. (original name was: NZ_CADIKT010000038.1)
  c00039_NZ_CADI.. (original name was: NZ_CADIKT010000039.1)
  c00040_NZ_CADI.. (original name was: NZ_CADIKT010000040.1)
  c00041_NZ_CADI.. (original name was: NZ_CADIKT010000041.1)
  c00042_NZ_CADI.. (original name was: NZ_CADIKT010000042.1)
  c00043_NZ_CADI.. (original name was: NZ_CADIKT010000043.1)
  c00044_NZ_CADI.. (original name was: NZ_CADIKT010000044.1)
  c00045_NZ_CADI.. (original name was: NZ_CADIKT010000045.1)
  c00046_NZ_CADI.. (original name was: NZ_CADIKT010000046.1)
  c00047_NZ_CADI.. (original name was: NZ_CADIKT010000047.1)
  c00048_NZ_CADI.. (original name was: NZ_CADIKT010000048.1)

Compact view
c00001_NZ_CADI.. - Region 1 - NAPAA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 900,367 - 934,338 nt. (total: 33,972 nt) Show pHMM detection rules used
NAPAA: (AMP-binding and PP-binding and TIGR02353)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NAPAA | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001184.1 |  | 0.28 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000888.1 |  | 0.28 | Other | bacilysin | Bacillus sp. CS93
BGC0001444.1 |  | 0.25 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001538.1 |  | 0.25 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0001197.1 |  | 0.24 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000375.1 |  | 0.22 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000678.1 |  | 0.22 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000427.1 |  | 0.22 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0001399.1 |  | 0.21 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0000228.1 |  | 0.20 | Polyketide | granaticin | Streptomyces violaceoruber

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001184.1 |  | 0.62 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000888.1 |  | 0.62 | Other | bacilysin | Bacillus sp. CS93
BGC0001444.1 |  | 0.59 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001538.1 |  | 0.59 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0001197.1 |  | 0.58 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000375.1 |  | 0.55 | NRP | indigoidine | Streptomyces chromofuscus
BGC0000678.1 |  | 0.55 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000427.1 |  | 0.54 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0001399.1 |  | 0.54 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0000228.1 |  | 0.53 | Polyketide | granaticin | Streptomyces violaceoruber

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 900366 - 934338:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg1_798: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (25..406): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DmEHNgTVSK
    Nearest Stachelhaus code:
      dab
    Stachelhaus code match:
      80% (moderate)

c00002_NZ_CADI.. - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 722,959 - 745,528 nt. (total: 22,570 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000842.1 |  | 0.17 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0000255.1 |  | 0.17 | Polyketide | pederin | Uncultured bacterium
BGC0001633.1 |  | 0.16 | Other | ketomemicin B3, ketomemicin B4 | Streptomyces mobaraensis NBRC 13819 = DSM 40847
BGC0000243.1 |  | 0.15 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001973.1 |  | 0.15 | Other | fervenulin | Streptomyces hiroshimensis
BGC0001972.1 |  | 0.15 | Other | toxoflavin, fervenulin | Streptomyces hiroshimensis
BGC0000841.1 |  | 0.15 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid | Streptomyces clavuligerus ATCC 27064
BGC0000805.1 |  | 0.15 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672
BGC0001610.1 |  | 0.15 | Other | gougerotin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000597.1 |  | 0.14 | RiPP | SWA-2138 | Streptomyces sp. e14

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000842.1 |  | 0.48 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0000255.1 |  | 0.48 | Polyketide | pederin | Uncultured bacterium
BGC0001633.1 |  | 0.46 | Other | ketomemicin B3, ketomemicin B4 | Streptomyces mobaraensis NBRC 13819 = DSM 40847
BGC0000243.1 |  | 0.46 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001973.1 |  | 0.45 | Other | fervenulin | Streptomyces hiroshimensis
BGC0001972.1 |  | 0.45 | Other | toxoflavin, fervenulin | Streptomyces hiroshimensis
BGC0000841.1 |  | 0.45 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid | Streptomyces clavuligerus ATCC 27064
BGC0000805.1 |  | 0.45 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672
BGC0001610.1 |  | 0.45 | Other | gougerotin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000597.1 |  | 0.44 | RiPP | SWA-2138 | Streptomyces sp. e14

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00003_NZ_CADI.. - Region 1 - phosphonate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 613,692 - 654,564 nt. (total: 40,873 nt) Show pHMM detection rules used
phosphonate: phosphonates

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | phosphonate | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001859.1 |  | 0.25 | Other (Phosphonate) | fosfomycin | Pseudomonas syringae
BGC0000904.1 |  | 0.23 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000937.1 |  | 0.22 | Other | fosfazinomycin A | Streptomyces sp. WM6372
BGC0001739.1 |  | 0.21 | Other | phosphonoacetic Acid | Streptomyces sp. NRRL F-525
BGC0002036.1 |  | 0.20 | Other | dehydrofosmidomycin | Streptomyces lavendulae
BGC0001782.1 |  | 0.17 | Other | spiroindimicin A, spiroindimicin B, spiroindimicin C, spiroindimicin D, indimicin A, indimicin B, indimicin C, indimicin D, indimicin E, lynamicin A, lynamicin D, lynamicin F, lynamicin G | Streptomyces sp. SCSIO 03032
BGC0001591.1 |  | 0.17 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.17 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001483.1 |  | 0.17 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0001538.1 |  | 0.16 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001859.1 |  | 0.59 | Other (Phosphonate) | fosfomycin | Pseudomonas syringae
BGC0000904.1 |  | 0.56 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000937.1 |  | 0.55 | Other | fosfazinomycin A | Streptomyces sp. WM6372
BGC0001739.1 |  | 0.53 | Other | phosphonoacetic Acid | Streptomyces sp. NRRL F-525
BGC0002036.1 |  | 0.52 | Other | dehydrofosmidomycin | Streptomyces lavendulae
BGC0001782.1 |  | 0.48 | Other | spiroindimicin A, spiroindimicin B, spiroindimicin C, spiroindimicin D, indimicin A, indimicin B, indimicin C, indimicin D, indimicin E, lynamicin A, lynamicin D, lynamicin F, lynamicin G | Streptomyces sp. SCSIO 03032
BGC0001591.1 |  | 0.48 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.48 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2
BGC0001483.1 |  | 0.48 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0001538.1 |  | 0.47 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00009_NZ_CADI.. - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 55,408 - 67,261 nt. (total: 11,854 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.36 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.32 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000940.1 |  | 0.30 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001453.1 |  | 0.30 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001572.1 |  | 0.30 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001713.1 |  | 0.21 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001499.1 |  | 0.20 | Other | aerobactin | Pantoea ananatis
BGC0001531.1 |  | 0.18 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0000496.1 |  | 0.17 | RiPP | AmfS | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.69 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.65 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000940.1 |  | 0.63 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001453.1 |  | 0.63 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001572.1 |  | 0.63 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001713.1 |  | 0.54 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001499.1 |  | 0.53 | Other | aerobactin | Pantoea ananatis
BGC0001531.1 |  | 0.50 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0000496.1 |  | 0.48 | RiPP | AmfS | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00012_NZ_CADI.. - Region 1 - resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 89,744 - 131,675 nt. (total: 41,932 nt) Show pHMM detection rules used
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001526.1 |  | 0.27 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001525.1 |  | 0.25 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000813.1 |  | 0.20 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001285.1 |  | 0.20 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0000214.1 |  | 0.19 | Polyketide | cosmomycin B | Streptomyces olindensis
BGC0001488.1 |  | 0.18 | Other | 4-formylaminooxyvinylglycine | Pseudomonas fluorescens WH6
BGC0000804.1 |  | 0.18 | Saccharide | acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03 | Streptomyces coelicoflavus ZG0656
BGC0000826.1 |  | 0.18 | Alkaloid | staurosporine | Streptomyces clavuligerus ATCC 27064
BGC0000880.1 |  | 0.18 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000767.1 |  | 0.18 | Saccharide | exopolysaccharide | Lactobacillus johnsonii

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001526.1 |  | 0.61 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001525.1 |  | 0.58 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000813.1 |  | 0.53 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0001285.1 |  | 0.52 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0000214.1 |  | 0.52 | Polyketide | cosmomycin B | Streptomyces olindensis
BGC0001488.1 |  | 0.50 | Other | 4-formylaminooxyvinylglycine | Pseudomonas fluorescens WH6
BGC0000804.1 |  | 0.50 | Saccharide | acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03 | Streptomyces coelicoflavus ZG0656
BGC0000826.1 |  | 0.49 | Alkaloid | staurosporine | Streptomyces clavuligerus ATCC 27064
BGC0000880.1 |  | 0.49 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000767.1 |  | 0.49 | Saccharide | exopolysaccharide | Lactobacillus johnsonii

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00013_NZ_CADI.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
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Location: 129,940 - 151,653 nt. (total: 21,714 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.29 | Terpene | carotenoid | Myxococcus xanthus
BGC0000640.1 |  | 0.24 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.23 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000656.1 |  | 0.23 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000633.1 |  | 0.20 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000664.1 |  | 0.20 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000634.1 |  | 0.20 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.20 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0001456.1 |  | 0.19 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0001227.1 |  | 0.19 | Terpene | isorenieratene | Streptomyces collinus Tu 365

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.63 | Terpene | carotenoid | Myxococcus xanthus
BGC0000640.1 |  | 0.58 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.57 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000656.1 |  | 0.56 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000633.1 |  | 0.53 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000664.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000634.1 |  | 0.52 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.52 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0001456.1 |  | 0.52 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0001227.1 |  | 0.51 | Terpene | isorenieratene | Streptomyces collinus Tu 365

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00020_NZ_CADI.. - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 46,832 - 57,236 nt. (total: 10,405 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.51 | Other | ectoine | Streptomyces anulatus
BGC0000855.1 |  | 0.42 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.41 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.41 | Other | ectoine | Methylophaga thalassica
BGC0000852.1 |  | 0.39 | Other | ectoine | Sporosarcina pasteurii
BGC0000857.1 |  | 0.35 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.35 | Other | ectoine | Methylarcula marina
BGC0000858.1 |  | 0.33 | Other | ectoine | Methylobacter marinus
BGC0000854.1 |  | 0.32 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0001917.1 |  | 0.14 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.79 | Other | ectoine | Streptomyces anulatus
BGC0000855.1 |  | 0.73 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.73 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.72 | Other | ectoine | Methylophaga thalassica
BGC0000852.1 |  | 0.71 | Other | ectoine | Sporosarcina pasteurii
BGC0000857.1 |  | 0.68 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.68 | Other | ectoine | Methylarcula marina
BGC0000858.1 |  | 0.66 | Other | ectoine | Methylobacter marinus
BGC0000854.1 |  | 0.66 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0001917.1 |  | 0.43 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names