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Overview
1.1
1.2
1.3
1.4

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_UHDP01000003 (original name was: NZ_UHDP01000003.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | siderophore | 912,540 | 926,371 | staphyloferrin A | Other:Non-NRP siderophore | 100%
Region 1.2 | cyclic-lactone-autoinducer | 1,060,489 | 1,081,194 |
Region 1.3 | siderophore | 2,462,084 | 2,478,536 | staphylobactin | Other | 68%
Region 1.4 | LAP | 2,635,896 | 2,657,948 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | siderophore | 912,540 | 926,371 | staphyloferrin A | Other:Non-NRP siderophore | 100%
Region 1.2 | cyclic-lactone-autoinducer | 1,060,489 | 1,081,194 |
Region 1.3 | siderophore | 2,462,084 | 2,478,536 | staphylobactin | Other | 68%
Region 1.4 | LAP | 2,635,896 | 2,657,948 |

No secondary metabolite regions were found in these records:
  NZ_UHDP01000002 (original name was: NZ_UHDP01000002.1)
  NZ_UHDP01000001 (original name was: NZ_UHDP01000001.1)

Compact view
c00001_NZ_UHDP.. - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 912,540 - 926,371 nt. (total: 13,832 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 0.51 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1 |  | 0.22 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000939.1 |  | 0.20 | Other | aerobactin | Grimontia hollisae
BGC0000947.1 |  | 0.19 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000883.1 |  | 0.16 | Other | arginomycin | Streptomyces arginensis
BGC0000943.1 |  | 0.15 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000294.1 |  | 0.13 | NRP | acinetobactin | Acinetobacter baumannii
BGC0001767.1 |  | 0.09 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0000708.1 |  | 0.09 | Saccharide | lividomycin | Streptomyces lividus
BGC0000325.1 |  | 0.08 | NRP | coelichelin | Streptomyces coelicolor A3(2)

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 0.79 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1 |  | 0.54 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000939.1 |  | 0.52 | Other | aerobactin | Grimontia hollisae
BGC0000947.1 |  | 0.51 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000883.1 |  | 0.46 | Other | arginomycin | Streptomyces arginensis
BGC0000943.1 |  | 0.44 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000294.1 |  | 0.42 | NRP | acinetobactin | Acinetobacter baumannii
BGC0001767.1 |  | 0.33 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0000708.1 |  | 0.33 | Saccharide | lividomycin | Streptomyces lividus
BGC0000325.1 |  | 0.32 | NRP | coelichelin | Streptomyces coelicolor A3(2)

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_UHDP.. - Region 2 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,060,489 - 1,081,194 nt. (total: 20,706 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.22 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0001618.1 |  | 0.16 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0000504.1 |  | 0.15 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001551.1 |  | 0.15 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001743.1 |  | 0.15 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000616.1 |  | 0.15 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001171.1 |  | 0.15 | RiPP | listeriolysin S | Listeria monocytogenes serotype 4b str. F2365
BGC0000540.1 |  | 0.15 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0001120.1 |  | 0.15 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000698.1 |  | 0.14 | Saccharide | hygromycin A | Streptomyces hygroscopicus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.55 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0001618.1 |  | 0.46 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0000504.1 |  | 0.46 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001551.1 |  | 0.46 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001743.1 |  | 0.45 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000616.1 |  | 0.45 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001171.1 |  | 0.45 | RiPP | listeriolysin S | Listeria monocytogenes serotype 4b str. F2365
BGC0000540.1 |  | 0.45 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0001120.1 |  | 0.45 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000698.1 |  | 0.43 | Saccharide | hygromycin A | Streptomyces hygroscopicus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_UHDP.. - Region 3 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,462,084 - 2,478,536 nt. (total: 16,453 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000943.1 |  | 0.44 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001572.1 |  | 0.32 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000295.1 |  | 0.31 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001499.1 |  | 0.31 | Other | aerobactin | Pantoea ananatis
BGC0001713.1 |  | 0.31 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000942.1 |  | 0.28 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000946.1 |  | 0.26 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0001408.1 |  | 0.18 | Other | xanthoferrin | Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000947.1 |  | 0.16 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000751.1 |  | 0.14 | Saccharide | capsular polysaccharide | Actinobacillus pleuropneumoniae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000943.1 |  | 0.74 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001572.1 |  | 0.65 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000295.1 |  | 0.65 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001499.1 |  | 0.65 | Other | aerobactin | Pantoea ananatis
BGC0001713.1 |  | 0.65 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000942.1 |  | 0.61 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000946.1 |  | 0.59 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0001408.1 |  | 0.49 | Other | xanthoferrin | Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000947.1 |  | 0.47 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000751.1 |  | 0.43 | Saccharide | capsular polysaccharide | Actinobacillus pleuropneumoniae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_UHDP.. - Region 4 - LAP
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,635,896 - 2,657,948 nt. (total: 22,053 nt) Show pHMM detection rules used
LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | LAP | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001521.1 |  | 0.19 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0001173.1 |  | 0.17 | RiPP | plantazolicin | Bacillus pumilus ATCC 7061
BGC0000569.1 |  | 0.17 | RiPP | plantazolicin | Bacillus velezensis FZB42
BGC0001171.1 |  | 0.16 | RiPP | listeriolysin S | Listeria monocytogenes serotype 4b str. F2365
BGC0000616.1 |  | 0.16 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001222.1 |  | 0.15 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.15 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.15 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000572.1 |  | 0.15 | RiPP | capistruin | Burkholderia thailandensis E444
BGC0001607.1 |  | 0.15 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001521.1 |  | 0.51 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0001173.1 |  | 0.49 | RiPP | plantazolicin | Bacillus pumilus ATCC 7061
BGC0000569.1 |  | 0.49 | RiPP | plantazolicin | Bacillus velezensis FZB42
BGC0001171.1 |  | 0.46 | RiPP | listeriolysin S | Listeria monocytogenes serotype 4b str. F2365
BGC0000616.1 |  | 0.46 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.46 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.46 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000572.1 |  | 0.45 | RiPP | capistruin | Burkholderia thailandensis E444
BGC0001607.1 |  | 0.44 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names