GCF_001611955.1_ASM161195v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP013911.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	1,594,405	1,615,111
Region 1.2	siderophore	1,740,755	1,755,752	staphyloferrin A	Other:Non-NRP siderophore	100%
Region 1.3	T3PKS,terpene	2,062,472	2,109,888
Region 1.4	RiPP-like	2,471,549	2,483,711

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	cyclic-lactone-autoinducer	1,594,405	1,615,111
Region 1.2	siderophore	1,740,755	1,755,752	staphyloferrin A	Other:Non-NRP siderophore	100%
Region 1.3	T3PKS,terpene	2,062,472	2,109,888
Region 1.4	RiPP-like	2,471,549	2,483,711

No secondary metabolite regions were found in these records:: NZ_CP013912.1

Compact view

NZ_CP013911.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1,594,405 - 1,615,111 nt. (total: 20,707 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001687.1	0.13	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSL12
BGC0000540.1	0.12	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000469.1	0.09	RiPP	bottromycin A2	Streptomyces sp. BC16019
BGC0001872.1	0.08	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0001053.1	0.08	NRP, Polyketide	tubulysin A	Archangium disciforme
BGC0001130.1	0.07	NRP, Polyketide	fabclavine Ia	Xenorhabdus budapestensis
BGC0001700.1	0.05	Polyketide	niphimycins C-E	Streptomyces sp. IMB7-145
BGC0000082.1	0.04	Polyketide	kijanimicin	Actinomadura kijaniata

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001687.1	0.42	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSL12
BGC0000540.1	0.40	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000469.1	0.34	RiPP	bottromycin A2	Streptomyces sp. BC16019
BGC0001872.1	0.31	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0001053.1	0.30	NRP, Polyketide	tubulysin A	Archangium disciforme
BGC0001130.1	0.27	NRP, Polyketide	fabclavine Ia	Xenorhabdus budapestensis
BGC0001700.1	0.21	Polyketide	niphimycins C-E	Streptomyces sp. IMB7-145
BGC0000082.1	0.20	Polyketide	kijanimicin	Actinomadura kijaniata

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP013911.1 - Region 2 - siderophore

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Location: 1,740,755 - 1,755,752 nt. (total: 14,998 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000944.1	0.54	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1	0.21	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000939.1	0.20	Other	aerobactin	Grimontia hollisae
BGC0000947.1	0.18	Other	vibrioferrin	Vibrio alginolyticus
BGC0000883.1	0.17	Other	arginomycin	Streptomyces arginensis
BGC0000943.1	0.15	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000423.1	0.08	NRP	scabichelin	Streptomyces scabiei 87.22
BGC0001767.1	0.08	NRP	salinichelins	Salinispora pacifica CNY331
BGC0000325.1	0.08	NRP	coelichelin	Streptomyces coelicolor A3(2)
BGC0000708.1	0.07	Saccharide	lividomycin	Streptomyces lividus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000944.1	0.81	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1	0.53	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000939.1	0.52	Other	aerobactin	Grimontia hollisae
BGC0000947.1	0.49	Other	vibrioferrin	Vibrio alginolyticus
BGC0000883.1	0.48	Other	arginomycin	Streptomyces arginensis
BGC0000943.1	0.44	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000423.1	0.31	NRP	scabichelin	Streptomyces scabiei 87.22
BGC0001767.1	0.30	NRP	salinichelins	Salinispora pacifica CNY331
BGC0000325.1	0.30	NRP	coelichelin	Streptomyces coelicolor A3(2)
BGC0000708.1	0.30	Saccharide	lividomycin	Streptomyces lividus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP013911.1 - Region 3 - T3PKS,terpene

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Location: 2,062,472 - 2,109,888 nt. (total: 47,417 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.89	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000644.1	0.51	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000648.1	0.46	Terpene	carotenoid	Myxococcus xanthus
BGC0000637.1	0.46	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000645.1	0.45	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0000640.1	0.44	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0001184.1	0.43	Other	bacilysin	Bacillus velezensis FZB42
BGC0000630.1	0.43	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000656.1	0.43	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0001227.1	0.42	Terpene	isorenieratene	Streptomyces collinus Tu 365

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.75	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000644.1	0.59	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000640.1	0.57	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000656.1	0.57	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000648.1	0.57	Terpene	carotenoid	Myxococcus xanthus
BGC0000630.1	0.56	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0001848.1	0.56	Other	diazaquinomycin H, diazaquinomycin J	Micromonospora sp. B006
BGC0001456.1	0.56	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000637.1	0.56	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000633.1	0.56	Terpene	carotenoid	Streptomyces avermitilis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP013911.1 - Region 4 - RiPP-like

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Location: 2,471,549 - 2,483,711 nt. (total: 12,163 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000758.1	0.22	Saccharide	capsular polysaccharide	Staphylococcus aureus
BGC0000617.1	0.19	RiPP	coagulin	Bacillus coagulans
BGC0000558.1	0.16	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000516.1	0.15	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001388.1	0.14	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.14	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.14	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000759.1	0.13	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159
BGC0002009.1	0.13	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000758.1	0.55	Saccharide	capsular polysaccharide	Staphylococcus aureus
BGC0000617.1	0.51	RiPP	coagulin	Bacillus coagulans
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000516.1	0.45	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0001928.1	0.44	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001388.1	0.43	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.43	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.43	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000759.1	0.42	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159
BGC0002009.1	0.42	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names