Select genomic region:
Overview
1.1
1.2
1.3
1.4
1.5
1.6

### Identified secondary metabolite regions using strictness 'relaxed'

NC_007795.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | siderophore | 77,516 | 93,234 | staphylobactin | Other | 87%
Region 2 | NRPS | 129,045 | 176,220 | aureusimine | NRP | 100%
Region 3 | lanthipeptide-class-i | 1,843,450 | 1,867,680 | hyicin 3682 | RiPP | 100%
Region 4 | cyclic-lactone-autoinducer | 2,083,820 | 2,104,580 |
Region 5 | siderophore | 2,253,966 | 2,268,981 | staphyloferrin A | Other:Non-NRP siderophore | 100%
Region 6 | T3PKS,terpene | 2,611,568 | 2,663,150 |

NC_007795.1 - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 77,516 - 93,234 nt. (total: 15,719 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000943.1 |  | 0.89 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000295.1 |  | 0.30 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001453.1 |  | 0.30 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001870.1 |  | 0.30 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000939.1 |  | 0.29 | Other | aerobactin | Grimontia hollisae
BGC0000946.1 |  | 0.25 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0000942.1 |  | 0.23 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0001184.1 |  | 0.21 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000888.1 |  | 0.21 | Other | bacilysin | Bacillus sp. CS93
BGC0001408.1 |  | 0.18 | Other | xanthoferrin | Xanthomonas oryzae pv. oryzae KACC 10331

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000943.1 |  | 0.96 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000295.1 |  | 0.64 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001453.1 |  | 0.64 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001870.1 |  | 0.63 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000939.1 |  | 0.62 | Other | aerobactin | Grimontia hollisae
BGC0000946.1 |  | 0.59 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0000942.1 |  | 0.56 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0001184.1 |  | 0.54 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000888.1 |  | 0.54 | Other | bacilysin | Bacillus sp. CS93
BGC0001408.1 |  | 0.49 | Other | xanthoferrin | Xanthomonas oryzae pv. oryzae KACC 10331

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_007795.1 - Region 2 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 129,045 - 176,220 nt. (total: 47,176 nt) Show pHMM detection rules used
NRPS: cds(Condensation and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NRPS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000308.1 |  | 0.88 | NRP | aureusimine | Staphylococcus aureus subsp. aureus str. JKD6008
BGC0001479.1 |  | 0.27 | NRP | anabaenopeptin NZ857, nostamide A | Nostoc punctiforme PCC 73102
BGC0000852.1 |  | 0.24 | Other | ectoine | Sporosarcina pasteurii
BGC0000853.1 |  | 0.23 | Other | ectoine | Streptomyces anulatus
BGC0001128.1 |  | 0.23 | NRP | luminmide | Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1 |  | 0.23 | NRP | xenotetrapeptide | Xenorhabdus nematophila ATCC 19061
BGC0000859.1 |  | 0.23 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0001135.1 |  | 0.23 | NRP | bicornutin A1, bicornutin A2 | Xenorhabdus budapestensis
BGC0000855.1 |  | 0.23 | Other | ectoine | Methylomicrobium kenyense
BGC0000856.1 |  | 0.23 | Other | ectoine | Methylophaga thalassica

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000308.1 |  | 0.96 | NRP | aureusimine | Staphylococcus aureus subsp. aureus str. JKD6008
BGC0001479.1 |  | 0.61 | NRP | anabaenopeptin NZ857, nostamide A | Nostoc punctiforme PCC 73102
BGC0000852.1 |  | 0.57 | Other | ectoine | Sporosarcina pasteurii
BGC0000853.1 |  | 0.57 | Other | ectoine | Streptomyces anulatus
BGC0001128.1 |  | 0.57 | NRP | luminmide | Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1 |  | 0.57 | NRP | xenotetrapeptide | Xenorhabdus nematophila ATCC 19061
BGC0000859.1 |  | 0.57 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0001135.1 |  | 0.56 | NRP | bicornutin A1, bicornutin A2 | Xenorhabdus budapestensis
BGC0000855.1 |  | 0.56 | Other | ectoine | Methylomicrobium kenyense
BGC0000856.1 |  | 0.56 | Other | ectoine | Methylophaga thalassica

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 2, location 129044 - 176220:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (val - X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg1_125: val - X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (417..807): val
  NRPSPredictor2: val
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      gly, ala, val, leu, ile, abu, iva
    Small clusters prediction:
      val, leu, ile, abu, iva
    Single AA prediction:
      val
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAfWLGGTFK
    Nearest Stachelhaus code:
      val
    Stachelhaus code match:
      90% (moderate)
  AMP-binding (1442..1834): X
  NRPSPredictor2: hydrophobic-aliphatic
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAmSIGaViK
    Nearest Stachelhaus code:
      lys
    Stachelhaus code match:
      70% (weak)

NC_007795.1 - Region 3 - lanthipeptide-class-i
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,843,450 - 1,867,680 nt. (total: 24,231 nt) Show pHMM detection rules used
lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Lanthipeptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | lanthipeptide-class-i | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001618.1 |  | 0.54 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0000541.1 |  | 0.31 | RiPP | paenicidin A | Paenibacillus polymyxa
BGC0000542.1 |  | 0.31 | RiPP | paenicidin B | Paenibacillus terrae
BGC0000508.1 |  | 0.29 | RiPP | epidermin | Staphylococcus epidermidis
BGC0000538.1 |  | 0.29 | RiPP | nisin Z | Lactococcus lactis
BGC0000556.1 |  | 0.29 | RiPP | streptin | Streptococcus pyogenes
BGC0000543.1 |  | 0.28 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000544.1 |  | 0.26 | RiPP | planosporicin | Planomonospora alba
BGC0001407.1 |  | 0.24 | RiPP | bicereucin | Bacillus cereus SJ1
BGC0001727.1 |  | 0.24 | RiPP | paenilan | Paenibacillus polymyxa E681

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001618.1 |  | 0.81 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0000541.1 |  | 0.64 | RiPP | paenicidin A | Paenibacillus polymyxa
BGC0000542.1 |  | 0.64 | RiPP | paenicidin B | Paenibacillus terrae
BGC0000508.1 |  | 0.63 | RiPP | epidermin | Staphylococcus epidermidis
BGC0000538.1 |  | 0.62 | RiPP | nisin Z | Lactococcus lactis
BGC0000556.1 |  | 0.62 | RiPP | streptin | Streptococcus pyogenes
BGC0000543.1 |  | 0.62 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000544.1 |  | 0.59 | RiPP | planosporicin | Planomonospora alba
BGC0001407.1 |  | 0.57 | RiPP | bicereucin | Bacillus cereus SJ1
BGC0001727.1 |  | 0.57 | RiPP | paenilan | Paenibacillus polymyxa E681

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.

#### Lanthipeptide(s) for ctg1_1692 - Putative Class I

ctg1_1693 leader / core peptide
  MEKVLDLDVQVKANNNSNDSAGDE - RIDhb DhaHDhaLC DhbPGCAKDhbGDhaFNDhaFC C
allorf_1858625_1858768 leader / core peptide
  LEKVLDLDVQVKGNNNTNDSAGDE - RIDhb DhaHLFC DhaFGCEKDhbGDhaFNDhaFC C

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg1_1693 - Class I
  Cleavage pHMM score: 3.40
  RODEO score: 33
  Monoisotopic mass: 2247.1 Da
  Molecular weight: 2248.6 Da
  Number of bridges: 3
  Additional modifications: AviCys
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    2266.6 Da N = 1
    2284.7 Da N = 2
    2302.7 Da N = 3
allorf_1858625_1858768 - Class I
  Cleavage pHMM score: 0.40
  RODEO score: 26
  Monoisotopic mass: 2419.1 Da
  Molecular weight: 2420.8 Da
  Number of bridges: 3
  Additional modifications: AviCys
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    2438.8 Da N = 1
    2456.9 Da N = 2

NC_007795.1 - Region 4 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,083,820 - 2,104,580 nt. (total: 20,761 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001687.1 |  | 0.13 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12
BGC0000207.1 |  | 0.13 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001872.1 |  | 0.08 | Polyketide | fabclavine-polyamine | Xenorhabdus bovienii SS-2004
BGC0001053.1 |  | 0.08 | NRP, Polyketide | tubulysin A | Archangium disciforme
BGC0001130.1 |  | 0.07 | NRP, Polyketide | fabclavine Ia | Xenorhabdus budapestensis
BGC0001700.1 |  | 0.05 | Polyketide | niphimycins C-E | Streptomyces sp. IMB7-145
BGC0000082.1 |  | 0.04 | Polyketide | kijanimicin | Actinomadura kijaniata
BGC0000163.1 |  | 0.03 | Polyketide | tetronasin | Streptomyces longisporoflavus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001687.1 |  | 0.42 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12
BGC0000207.1 |  | 0.41 | Polyketide | chartreusin | Streptomyces chartreusis
BGC0001872.1 |  | 0.32 | Polyketide | fabclavine-polyamine | Xenorhabdus bovienii SS-2004
BGC0001053.1 |  | 0.30 | NRP, Polyketide | tubulysin A | Archangium disciforme
BGC0001130.1 |  | 0.27 | NRP, Polyketide | fabclavine Ia | Xenorhabdus budapestensis
BGC0001700.1 |  | 0.21 | Polyketide | niphimycins C-E | Streptomyces sp. IMB7-145
BGC0000082.1 |  | 0.20 | Polyketide | kijanimicin | Actinomadura kijaniata
BGC0000163.1 |  | 0.17 | Polyketide | tetronasin | Streptomyces longisporoflavus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_007795.1 - Region 5 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,253,966 - 2,268,981 nt. (total: 15,016 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 1.00 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1 |  | 0.21 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000939.1 |  | 0.20 | Other | aerobactin | Grimontia hollisae
BGC0000947.1 |  | 0.18 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000883.1 |  | 0.16 | Other | arginomycin | Streptomyces arginensis
BGC0000943.1 |  | 0.14 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000703.1 |  | 0.14 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001211.1 |  | 0.08 | NRP | albachelin | Amycolatopsis alba DSM 44262
BGC0000423.1 |  | 0.08 | NRP | scabichelin | Streptomyces scabiei 87.22
BGC0001767.1 |  | 0.08 | NRP | salinichelins | Salinispora pacifica CNY331

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 1.00 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1 |  | 0.53 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000939.1 |  | 0.53 | Other | aerobactin | Grimontia hollisae
BGC0000947.1 |  | 0.49 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000883.1 |  | 0.47 | Other | arginomycin | Streptomyces arginensis
BGC0000943.1 |  | 0.44 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000703.1 |  | 0.43 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001211.1 |  | 0.32 | NRP | albachelin | Amycolatopsis alba DSM 44262
BGC0000423.1 |  | 0.31 | NRP | scabichelin | Streptomyces scabiei 87.22
BGC0001767.1 |  | 0.31 | NRP | salinichelins | Salinispora pacifica CNY331

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
NC_007795.1 - Region 6 - T3PKS,terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,611,568 - 2,663,150 nt. (total: 51,583 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000647.1 |  |  | 0.47 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000644.1 |  |  | 0.41 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000648.1 |  |  | 0.39 | Terpene | carotenoid | Myxococcus xanthus
BGC0000645.1 |  |  | 0.39 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000637.1 |  |  | 0.39 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000787.1 |  |  | 0.37 | Saccharide | O-antigen | Escherichia coli
BGC0001412.1 |  |  | 0.35 | Saccharide | polysaccharide C | Bacteroides fragilis
BGC0000636.1 |  |  | 0.34 | Terpene | carotenoid | Brevibacterium linens
BGC0000646.1 |  |  | 0.34 | Terpene | β-carotein | uncultured bacterium
BGC0000640.1 |  |  | 0.33 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.65 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000644.1 |  | 0.59 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000643.1 |  | 0.58 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000634.1 |  | 0.58 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000640.1 |  | 0.57 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000656.1 |  | 0.57 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000646.1 |  | 0.57 | Terpene | β-carotein | uncultured bacterium
BGC0000648.1 |  | 0.57 | Terpene | carotenoid | Myxococcus xanthus
BGC0000637.1 |  | 0.56 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000630.1 |  | 0.56 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names