GCF_900452405.1_49508_H02_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_UGNQ01000001 (original name was: NZ_UGNQ01000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NAPAA	1	28,307
Region 2.2	terpene	117,183	138,163	carotenoid	Terpene	21%
Region 2.3	T3PKS	1,482,754	1,523,875	alkylresorcinol	Polyketide	100%
Region 2.4	NAPAA	2,237,471	2,271,613
Region 2.5	ectoine	2,289,521	2,299,937	ectoine	Other	100%

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	NAPAA	1	28,307
Region 2.2	terpene	117,183	138,163	carotenoid	Terpene	21%
Region 2.3	T3PKS	1,482,754	1,523,875	alkylresorcinol	Polyketide	100%
Region 2.4	NAPAA	2,237,471	2,271,613
Region 2.5	ectoine	2,289,521	2,299,937	ectoine	Other	100%

No secondary metabolite regions were found in these records:: NZ_UGNQ01000002 (original name was: NZ_UGNQ01000002.1)

Compact view

c00002_NZ_UGNQ.. - Region 1 - NAPAA

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Location: 1 - 28,307 nt. (total: 28,307 nt) Show pHMM detection rules used

Region on contig edge.

NAPAA: (AMP-binding and PP-binding and TIGR02353)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001900.1	0.18	NRP	fragin	Burkholderia cenocepacia H111
BGC0001758.1	0.18	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000375.1	0.18	NRP	indigoidine	Streptomyces chromofuscus
BGC0001844.1	0.18	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001128.1	0.18	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.18	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001641.1	0.18	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833.1	0.18	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001168.1	0.18	NRP	livipeptin	Streptomyces lividans 1326

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001900.1	0.50	NRP	fragin	Burkholderia cenocepacia H111
BGC0001758.1	0.50	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000375.1	0.50	NRP	indigoidine	Streptomyces chromofuscus
BGC0001844.1	0.50	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001128.1	0.50	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.49	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001641.1	0.49	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833.1	0.49	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001168.1	0.49	NRP	livipeptin	Streptomyces lividans 1326

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 28307:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_10

Search NORINE for peptide: strict or relaxed

AMP-binding (30..404): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAESIGtVvK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 80% (moderate)

c00002_NZ_UGNQ.. - Region 2 - terpene

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Location: 117,183 - 138,163 nt. (total: 20,981 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.31	Terpene	carotenoid	Myxococcus xanthus
BGC0000637.1	0.28	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000650.1	0.27	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000644.1	0.22	Terpene	carotenoid	Dietzia sp. CQ4
BGC0001227.1	0.21	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000630.1	0.19	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000703.1	0.18	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000635.1	0.17	Terpene	carotenoid	Paracoccus sp. N81106
BGC0000801.1	0.14	Saccharide	galactoglucan	Sinorhizobium meliloti
BGC0001985.1	0.14	Other	pyrazomycin	Streptomyces candidus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.64	Terpene	carotenoid	Myxococcus xanthus
BGC0000637.1	0.62	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000650.1	0.61	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000644.1	0.54	Terpene	carotenoid	Dietzia sp. CQ4
BGC0001227.1	0.54	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000630.1	0.51	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000703.1	0.49	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000635.1	0.49	Terpene	carotenoid	Paracoccus sp. N81106
BGC0000801.1	0.44	Saccharide	galactoglucan	Sinorhizobium meliloti
BGC0001985.1	0.44	Other	pyrazomycin	Streptomyces candidus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00002_NZ_UGNQ.. - Region 3 - T3PKS

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Location: 1,482,754 - 1,523,875 nt. (total: 41,122 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.41	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001343.1	0.19	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001831.1	0.19	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0002000.1	0.18	Polyketide	setomimycin	Streptomyces aurantiacus JA 4570
BGC0001687.1	0.18	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSL12
BGC0001120.1	0.18	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000234.1	0.18	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0001723.1	0.17	Polyketide	oviedomycin	Streptomyces antibioticus
BGC0000231.1	0.17	Polyketide	griseusin	Streptomyces griseus
BGC0000228.1	0.17	Polyketide	granaticin	Streptomyces violaceoruber

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.73	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001343.1	0.51	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001831.1	0.51	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0002000.1	0.50	Polyketide	setomimycin	Streptomyces aurantiacus JA 4570
BGC0001687.1	0.50	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSL12
BGC0001120.1	0.49	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000234.1	0.49	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0001723.1	0.48	Polyketide	oviedomycin	Streptomyces antibioticus
BGC0000231.1	0.48	Polyketide	griseusin	Streptomyces griseus
BGC0000228.1	0.48	Polyketide	granaticin	Streptomyces violaceoruber

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00002_NZ_UGNQ.. - Region 4 - NAPAA

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Location: 2,237,471 - 2,271,613 nt. (total: 34,143 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and PP-binding and TIGR02353)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.22	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.22	NRP	indigoidine	Streptomyces chromofuscus
BGC0000585.1	0.22	RiPP	microcin C7	Escherichia coli
BGC0001399.1	0.21	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001833.1	0.19	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001135.1	0.19	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.19	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001479.1	0.19	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001641.1	0.19	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001615.1	0.19	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.55	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.55	NRP	indigoidine	Streptomyces chromofuscus
BGC0000585.1	0.55	RiPP	microcin C7	Escherichia coli
BGC0001399.1	0.53	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001833.1	0.51	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001135.1	0.51	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.50	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001479.1	0.50	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001641.1	0.50	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001615.1	0.50	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 4, location 2237470 - 2271613:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_2143

Search NORINE for peptide: strict or relaxed

AMP-binding (71..460): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFEymgtVtK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 50% (weak)

c00002_NZ_UGNQ.. - Region 5 - ectoine

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Location: 2,289,521 - 2,299,937 nt. (total: 10,417 nt) Show pHMM detection rules used

ectoine: ectoine_synt

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000853.1	0.52	Other	ectoine	Streptomyces anulatus
BGC0000852.1	0.50	Other	ectoine	Sporosarcina pasteurii
BGC0000855.1	0.39	Other	ectoine	Methylomicrobium kenyense
BGC0000859.1	0.32	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000858.1	0.32	Other	ectoine	Methylobacter marinus
BGC0000856.1	0.31	Other	ectoine	Methylophaga thalassica
BGC0000860.1	0.26	Other	ectoine	Methylarcula marina
BGC0000857.1	0.26	Other	ectoine	Methylophaga alcalica
BGC0000854.1	0.25	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0001599.1	0.13	NRP	fragin	Burkholderia cenocepacia H111

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000853.1	0.80	Other	ectoine	Streptomyces anulatus
BGC0000852.1	0.78	Other	ectoine	Sporosarcina pasteurii
BGC0000855.1	0.71	Other	ectoine	Methylomicrobium kenyense
BGC0000859.1	0.66	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000858.1	0.65	Other	ectoine	Methylobacter marinus
BGC0000856.1	0.65	Other	ectoine	Methylophaga thalassica
BGC0000860.1	0.60	Other	ectoine	Methylarcula marina
BGC0000857.1	0.60	Other	ectoine	Methylophaga alcalica
BGC0000854.1	0.58	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0001599.1	0.41	NRP	fragin	Burkholderia cenocepacia H111

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names