GCF_000725405.1_ASM72540v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP008889.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	324,695	335,567	asukamycin	Polyketide:Type II	4%
Region 1.2	terpene	493,595	514,554	carotenoid	Terpene	21%
Region 1.3	NAPAA	566,786	600,961

No secondary metabolite regions were found in these records:: NZ_CP008890.1

Compact view

NZ_CP008889.1 - Region 1 - RiPP-like

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Location: 324,695 - 335,567 nt. (total: 10,873 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	RiPP-like	Similarity score	Type	Compound(s)	Organism
BGC0000703.1		0.15	Saccharide	kanamycin	Streptomyces kanamyceticus

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0000703.1		0.45	Saccharide	kanamycin	Streptomyces kanamyceticus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP008889.1 - Region 2 - terpene

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Location: 493,595 - 514,554 nt. (total: 20,960 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000646.1	0.20	Terpene	β-carotein	uncultured bacterium
BGC0000648.1	0.20	Terpene	carotenoid	Myxococcus xanthus
BGC0000640.1	0.19	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000664.1	0.18	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000639.1	0.18	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000641.1	0.18	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000644.1	0.17	Terpene	carotenoid	Dietzia sp. CQ4
BGC0001903.1	0.17	Other	neocarazostatin A	Streptomyces sp. MA37
BGC0000637.1	0.17	Terpene	carotenoid	Corynebacterium glutamicum
BGC0001911.1	0.17	Terpene	raimonol	Streptomyces anulatus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000646.1	0.53	Terpene	β-carotein	uncultured bacterium
BGC0000648.1	0.53	Terpene	carotenoid	Myxococcus xanthus
BGC0000640.1	0.51	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000664.1	0.50	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000639.1	0.50	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000641.1	0.49	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000644.1	0.49	Terpene	carotenoid	Dietzia sp. CQ4
BGC0001903.1	0.48	Other	neocarazostatin A	Streptomyces sp. MA37
BGC0000637.1	0.48	Terpene	carotenoid	Corynebacterium glutamicum
BGC0001911.1	0.48	Terpene	raimonol	Streptomyces anulatus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP008889.1 - Region 3 - NAPAA

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Location: 566,786 - 600,961 nt. (total: 34,176 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and PP-binding and TIGR02353)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001399.1	0.20	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001120.1	0.18	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001641.1	0.18	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001900.1	0.18	NRP	fragin	Burkholderia cenocepacia H111
BGC0001758.1	0.18	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001168.1	0.18	NRP	livipeptin	Streptomyces lividans 1326
BGC0001479.1	0.18	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001135.1	0.18	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001844.1	0.18	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001399.1	0.53	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001120.1	0.50	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001641.1	0.50	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001900.1	0.50	NRP	fragin	Burkholderia cenocepacia H111
BGC0001758.1	0.49	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001168.1	0.49	NRP	livipeptin	Streptomyces lividans 1326
BGC0001479.1	0.49	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001135.1	0.49	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001844.1	0.49	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 3, location 566785 - 600961:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_535

Search NORINE for peptide: strict or relaxed

AMP-binding (47..426): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAESIGtVvK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 80% (moderate)