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Overview
1.1
1.2
1.3
1.4
1.5
1.6

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP082331.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ectoine | 270,502 | 280,873 |
Region 1.2 | RRE-containing | 574,426 | 594,758 |
Region 1.3 | siderophore | 1,130,982 | 1,142,817 |
Region 1.4 | betalactone | 1,488,206 | 1,515,168 | microansamycin | Polyketide | 7%
Region 1.5 | NAPAA | 1,545,575 | 1,579,336 | stenothricin | NRP:Cyclic depsipeptide | 31%
Region 1.6 | terpene | 2,248,012 | 2,268,908 | carotenoid | Terpene | 66%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ectoine | 270,502 | 280,873 |
Region 1.2 | RRE-containing | 574,426 | 594,758 |
Region 1.3 | siderophore | 1,130,982 | 1,142,817 |
Region 1.4 | betalactone | 1,488,206 | 1,515,168 | microansamycin | Polyketide | 7%
Region 1.5 | NAPAA | 1,545,575 | 1,579,336 | stenothricin | NRP:Cyclic depsipeptide | 31%
Region 1.6 | terpene | 2,248,012 | 2,268,908 | carotenoid | Terpene | 66%

No secondary metabolite regions were found in these records:
  NZ_CP082332.1

Compact view
NZ_CP082331.1 - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 270,502 - 280,873 nt. (total: 10,372 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001778.1 |  | 0.35 | Other | showdomycin | Streptomyces showdoensis
BGC0001844.1 |  | 0.14 | NRP | holrhizin | Paraburkholderia rhizoxinica HKI 454
BGC0000193.1 |  | 0.14 | Polyketide | aclacinomycin | Streptomyces galilaeus
BGC0000891.1 |  | 0.14 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.14 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0001463.1 |  | 0.13 | Other | 2,3,4,5-tetrabromopyrrole | Pseudoalteromonas piscicida
BGC0001241.1 |  | 0.13 | Terpene | ergotamine | Claviceps fusiformis
BGC0001267.1 |  | 0.13 | Terpene | lysergic acid, elymoclavine | Claviceps fusiformis
BGC0001343.1 |  | 0.11 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0001006.1 |  | 0.10 | NRP, Polyketide | lymphostin, neolymphostinol B, lymphostinol, neolymphostin B | Salinispora tropica CNB-440

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001778.1 |  | 0.68 | Other | showdomycin | Streptomyces showdoensis
BGC0001844.1 |  | 0.43 | NRP | holrhizin | Paraburkholderia rhizoxinica HKI 454
BGC0000193.1 |  | 0.43 | Polyketide | aclacinomycin | Streptomyces galilaeus
BGC0000891.1 |  | 0.43 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000890.1 |  | 0.43 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0001463.1 |  | 0.42 | Other | 2,3,4,5-tetrabromopyrrole | Pseudoalteromonas piscicida
BGC0001241.1 |  | 0.42 | Terpene | ergotamine | Claviceps fusiformis
BGC0001267.1 |  | 0.42 | Terpene | lysergic acid, elymoclavine | Claviceps fusiformis
BGC0001343.1 |  | 0.38 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0001006.1 |  | 0.37 | NRP, Polyketide | lymphostin, neolymphostinol B, lymphostinol, neolymphostin B | Salinispora tropica CNB-440

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP082331.1 - Region 2 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 574,426 - 594,758 nt. (total: 20,333 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001894.1 |  | 0.17 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0000780.1 |  | 0.14 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000763.1 |  | 0.13 | Saccharide | stewartan | Pantoea stewartii subsp. stewartii DC283
BGC0001812.1 |  | 0.04 | Polyketide | tylactone | Micromonospora chalcea subsp. izumensis
BGC0000362.1 |  | 0.03 | NRP | glycopeptidolipid | Mycobacterium avium

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001894.1 |  | 0.48 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0000780.1 |  | 0.44 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000763.1 |  | 0.42 | Saccharide | stewartan | Pantoea stewartii subsp. stewartii DC283
BGC0001812.1 |  | 0.17 | Polyketide | tylactone | Micromonospora chalcea subsp. izumensis
BGC0000362.1 |  | 0.16 | NRP | glycopeptidolipid | Mycobacterium avium

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP082331.1 - Region 3 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,130,982 - 1,142,817 nt. (total: 11,836 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.50 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.41 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  | 0.34 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001572.1 |  | 0.31 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000940.1 |  | 0.25 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001499.1 |  | 0.17 | Other | aerobactin | Pantoea ananatis
BGC0001531.1 |  | 0.17 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0001713.1 |  | 0.16 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000244.1 |  | 0.16 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001985.1 |  | 0.15 | Other | pyrazomycin | Streptomyces candidus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001478.1 |  | 0.78 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.73 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  | 0.67 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001572.1 |  | 0.64 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000940.1 |  | 0.59 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001499.1 |  | 0.49 | Other | aerobactin | Pantoea ananatis
BGC0001531.1 |  | 0.48 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0001713.1 |  | 0.46 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000244.1 |  | 0.46 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001985.1 |  | 0.45 | Other | pyrazomycin | Streptomyces candidus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
NZ_CP082331.1 - Region 4 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,488,206 - 1,515,168 nt. (total: 26,963 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000889.1 |  | 0.23 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000649.1 |  | 0.23 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0002029.1 |  | 0.21 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.21 | Other | ferroverdin | Streptomyces lunaelactis
BGC0001483.1 |  | 0.20 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0001935.1 |  | 0.19 | Other | 3,7-dihydroxytropolone | Streptomyces cyaneofuscatus
BGC0001487.1 |  | 0.19 | Other | 3,7-dihydroxytropolone | Streptomyces cyaneofuscatus
BGC0001387.1 |  | 0.19 | Other | nucleocidin | Streptomyces calvus
BGC0000698.1 |  | 0.18 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0002009.1 |  | 0.18 | Polyketide | kanglemycin A, kanglemycin V1, kanglemycin V2 | Amycolatopsis vancoresmycina

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000889.1 |  | 0.56 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000649.1 |  | 0.56 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0002029.1 |  | 0.54 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.54 | Other | ferroverdin | Streptomyces lunaelactis
BGC0001483.1 |  | 0.52 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0001935.1 |  | 0.51 | Other | 3,7-dihydroxytropolone | Streptomyces cyaneofuscatus
BGC0001487.1 |  | 0.51 | Other | 3,7-dihydroxytropolone | Streptomyces cyaneofuscatus
BGC0001387.1 |  | 0.51 | Other | nucleocidin | Streptomyces calvus
BGC0000698.1 |  | 0.50 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0002009.1 |  | 0.49 | Polyketide | kanglemycin A, kanglemycin V1, kanglemycin V2 | Amycolatopsis vancoresmycina

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP082331.1 - Region 5 - NAPAA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,545,575 - 1,579,336 nt. (total: 33,762 nt) Show pHMM detection rules used
NAPAA: (AMP-binding and PP-binding and TIGR02353)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NAPAA | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000858.1 |  | 0.23 | Other | ectoine | Methylobacter marinus
BGC0000855.1 |  | 0.23 | Other | ectoine | Methylomicrobium kenyense
BGC0000852.1 |  | 0.23 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.23 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.23 | Other | ectoine | Methylophaga thalassica
BGC0000375.1 |  | 0.21 | NRP | indigoidine | Streptomyces chromofuscus
BGC0001399.1 |  | 0.21 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0000719.1 |  | 0.21 | Saccharide | tobramycin | Streptoalloteichus hindustanus
BGC0000427.1 |  | 0.20 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0000723.1 |  | 0.19 | Saccharide | β-D-galactosylvalidoxylamine-A | Streptomyces hygroscopicus subsp. limoneus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000858.1 |  | 0.57 | Other | ectoine | Methylobacter marinus
BGC0000855.1 |  | 0.56 | Other | ectoine | Methylomicrobium kenyense
BGC0000852.1 |  | 0.56 | Other | ectoine | Sporosarcina pasteurii
BGC0000859.1 |  | 0.56 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.56 | Other | ectoine | Methylophaga thalassica
BGC0000375.1 |  | 0.54 | NRP | indigoidine | Streptomyces chromofuscus
BGC0001399.1 |  | 0.54 | NRP | fellutamide B | Aspergillus nidulans FGSC A4
BGC0000719.1 |  | 0.53 | Saccharide | tobramycin | Streptoalloteichus hindustanus
BGC0000427.1 |  | 0.53 | NRP | shinorine, 4-deoxygadusol, mycosporine glycine | Trichormus variabilis ATCC 29413
BGC0000723.1 |  | 0.52 | Saccharide | β-D-galactosylvalidoxylamine-A | Streptomyces hygroscopicus subsp. limoneus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 5, location 1545574 - 1579336:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg1_1365: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (0..337): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAESIGtVvK
    Nearest Stachelhaus code:
      lys
    Stachelhaus code match:
      80% (moderate)

NZ_CP082331.1 - Region 6 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,248,012 - 2,268,908 nt. (total: 20,897 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000644.1 |  | 0.35 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000645.1 |  | 0.30 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000650.1 |  | 0.28 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000664.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000648.1 |  | 0.21 | Terpene | carotenoid | Myxococcus xanthus
BGC0000637.1 |  | 0.20 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0001456.1 |  | 0.19 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000649.1 |  | 0.19 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000663.1 |  | 0.17 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0001521.1 |  | 0.17 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000644.1 |  | 0.68 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000645.1 |  | 0.64 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000650.1 |  | 0.62 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000664.1 |  | 0.54 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000648.1 |  | 0.54 | Terpene | carotenoid | Myxococcus xanthus
BGC0000637.1 |  | 0.53 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0001456.1 |  | 0.51 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000649.1 |  | 0.51 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000663.1 |  | 0.48 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0001521.1 |  | 0.48 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
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