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Overview
1.1
1.2
1.3
1.4
1.5

### Identified secondary metabolite regions using strictness 'relaxed'

NC_013720.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | terpene | 221,117 | 242,861 |
Region 2 | terpene | 1,078,634 | 1,096,522 |
Region 3 | RiPP-like | 1,173,918 | 1,184,895 |
Region 4 | terpene | 2,162,443 | 2,184,617 |
Region 5 | NRPS-like | 4,955,975 | 4,999,334 | 1-heptadecene | Polyketide:Modular type I | 100%

NC_013720.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 221,117 - 242,861 nt. (total: 21,745 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002007.1 |  | 0.12 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0000043.1 |  | 0.11 | Polyketide | curacin A | Moorea producens 19L
BGC0001686.1 |  | 0.11 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567
BGC0001788.1 |  | 0.10 | RiPP | suicin 65 | Streptococcus suis
BGC0000511.1 |  | 0.10 | RiPP | ericin S | Bacillus subtilis
BGC0000668.1 |  | 0.10 | Terpene, Alkaloid | 12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole | Hapalosiphon welwitschii UTEX B 1830
BGC0000556.1 |  | 0.09 | RiPP | streptin | Streptococcus pyogenes
BGC0000842.1 |  | 0.09 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0001594.1 |  | 0.09 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0002026.1 |  | 0.09 | NRP | thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2 | Jahnella sp. MSr9139

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002007.1 |  | 0.39 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0000043.1 |  | 0.38 | Polyketide | curacin A | Moorea producens 19L
BGC0001686.1 |  | 0.37 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567
BGC0001788.1 |  | 0.36 | RiPP | suicin 65 | Streptococcus suis
BGC0000511.1 |  | 0.36 | RiPP | ericin S | Bacillus subtilis
BGC0000668.1 |  | 0.35 | Terpene, Alkaloid | 12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole | Hapalosiphon welwitschii UTEX B 1830
BGC0000556.1 |  | 0.34 | RiPP | streptin | Streptococcus pyogenes
BGC0000842.1 |  | 0.34 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0001594.1 |  | 0.33 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0002026.1 |  | 0.32 | NRP | thaxteramide A1, thaxteramide A2, thaxteramide B1, thaxteramide B2 | Jahnella sp. MSr9139

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_013720.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,078,634 - 1,096,522 nt. (total: 17,889 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.23 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000630.1 |  | 0.16 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000640.1 |  | 0.15 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000634.1 |  | 0.14 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000646.1 |  | 0.14 | Terpene | β-carotein | uncultured bacterium
BGC0000643.1 |  | 0.14 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000635.1 |  | 0.12 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0000642.1 |  | 0.12 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413
BGC0000639.1 |  | 0.12 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000641.1 |  | 0.12 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.56 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000630.1 |  | 0.46 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000640.1 |  | 0.45 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000634.1 |  | 0.44 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000646.1 |  | 0.44 | Terpene | β-carotein | uncultured bacterium
BGC0000643.1 |  | 0.44 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000635.1 |  | 0.39 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0000642.1 |  | 0.39 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413
BGC0000639.1 |  | 0.39 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000641.1 |  | 0.39 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_013720.1 - Region 3 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,173,918 - 1,184,895 nt. (total: 10,978 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001486.1 |  | 0.07 | RiPP | 3-thiaglutamate | Pseudomonas syringae pv. maculicola str. ES4326
BGC0002027.1 |  | 0.07 | RiPP | TglA-thiaGlu | Pseudomonas syringae pv. maculicola str. ES4326
BGC0001687.1 |  | 0.03 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001486.1 |  | 0.28 | RiPP | 3-thiaglutamate | Pseudomonas syringae pv. maculicola str. ES4326
BGC0002027.1 |  | 0.28 | RiPP | TglA-thiaGlu | Pseudomonas syringae pv. maculicola str. ES4326
BGC0001687.1 |  | 0.16 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_013720.1 - Region 4 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,162,443 - 2,184,617 nt. (total: 22,175 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000888.1 |  | 0.28 | Other | bacilysin | Bacillus sp. CS93
BGC0001184.1 |  | 0.25 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000386.1 |  | 0.21 | NRP | malleobactin A, malleobactin B, malleobactin C, malleobactin D | Burkholderia thailandensis E264
BGC0000775.1 |  | 0.18 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000554.1 |  | 0.17 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001120.1 |  | 0.17 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001551.1 |  | 0.16 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000504.1 |  | 0.16 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000616.1 |  | 0.16 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001156.1 |  | 0.16 | Terpene | platencin | Streptomyces platensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000888.1 |  | 0.62 | Other | bacilysin | Bacillus sp. CS93
BGC0001184.1 |  | 0.58 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000386.1 |  | 0.53 | NRP | malleobactin A, malleobactin B, malleobactin C, malleobactin D | Burkholderia thailandensis E264
BGC0000775.1 |  | 0.50 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000554.1 |  | 0.49 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001120.1 |  | 0.48 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001551.1 |  | 0.47 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000504.1 |  | 0.47 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000616.1 |  | 0.46 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001156.1 |  | 0.46 | Terpene | platencin | Streptomyces platensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_013720.1 - Region 5 - NRPS-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 4,955,975 - 4,999,334 nt. (total: 43,360 nt) Show pHMM detection rules used
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NRPS-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001831.1 |  | 0.24 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001897.1 |  | 0.20 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001458.1 |  | 0.20 | Other (Aminocoumarin) | salinipostin G | Salinispora tropica CNB-440
BGC0000255.1 |  | 0.17 | Polyketide | pederin | Uncultured bacterium
BGC0001833.1 |  | 0.17 | NRP | icosalide A, icosalide B | Burkholderia gladioli
BGC0001135.1 |  | 0.17 | NRP | bicornutin A1, bicornutin A2 | Xenorhabdus budapestensis
BGC0000810.1 |  | 0.17 | Alkaloid | benzoxazinone DIMBOA | Zea mays
BGC0000761.1 |  | 0.16 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0000892.1 |  | 0.16 | Other | caryoynencin | Burkholderia gladioli BSR3
BGC0001164.1 |  | 0.16 | Polyketide | 1-heptadecene | Cyanothece sp. PCC 7822

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001831.1 |  | 0.58 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001897.1 |  | 0.53 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001458.1 |  | 0.52 | Other (Aminocoumarin) | salinipostin G | Salinispora tropica CNB-440
BGC0000255.1 |  | 0.49 | Polyketide | pederin | Uncultured bacterium
BGC0001833.1 |  | 0.48 | NRP | icosalide A, icosalide B | Burkholderia gladioli
BGC0001135.1 |  | 0.48 | NRP | bicornutin A1, bicornutin A2 | Xenorhabdus budapestensis
BGC0000810.1 |  | 0.48 | Alkaloid | benzoxazinone DIMBOA | Zea mays
BGC0000761.1 |  | 0.47 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0000892.1 |  | 0.47 | Other | caryoynencin | Burkholderia gladioli BSR3
BGC0001164.1 |  | 0.46 | Polyketide | 1-heptadecene | Cyanothece sp. PCC 7822

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names