Select genomic region:
Overview
4.1
4.2
7.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00004_NZ_CABK.. (original name was: NZ_CABKSP010000004.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | T3PKS | 74,946 | 116,058 |
Region 4.2 | ectoine | 222,259 | 232,651 | ectoine | Other | 50%

c00007_NZ_CABK.. (original name was: NZ_CABKSP010000007.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | terpene | 68,288 | 89,181 | carotenoid | Terpene | 28%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | T3PKS | 74,946 | 116,058 |
Region 4.2 | ectoine | 222,259 | 232,651 | ectoine | Other | 50%
Region 7.1 | terpene | 68,288 | 89,181 | carotenoid | Terpene | 28%

No secondary metabolite regions were found in these records:
  c00001_NZ_CABK.. (original name was: NZ_CABKSP010000001.1)
  c00002_NZ_CABK.. (original name was: NZ_CABKSP010000002.1)
  c00003_NZ_CABK.. (original name was: NZ_CABKSP010000003.1)
  c00005_NZ_CABK.. (original name was: NZ_CABKSP010000005.1)
  c00006_NZ_CABK.. (original name was: NZ_CABKSP010000006.1)
  c00008_NZ_CABK.. (original name was: NZ_CABKSP010000008.1)
  c00009_NZ_CABK.. (original name was: NZ_CABKSP010000009.1)
  c00010_NZ_CABK.. (original name was: NZ_CABKSP010000010.1)
  c00011_NZ_CABK.. (original name was: NZ_CABKSP010000011.1)
  c00012_NZ_CABK.. (original name was: NZ_CABKSP010000012.1)
  c00013_NZ_CABK.. (original name was: NZ_CABKSP010000013.1)
  c00014_NZ_CABK.. (original name was: NZ_CABKSP010000014.1)
  c00015_NZ_CABK.. (original name was: NZ_CABKSP010000015.1)
  c00016_NZ_CABK.. (original name was: NZ_CABKSP010000016.1)
  c00017_NZ_CABK.. (original name was: NZ_CABKSP010000017.1)
  c00018_NZ_CABK.. (original name was: NZ_CABKSP010000018.1)
  c00019_NZ_CABK.. (original name was: NZ_CABKSP010000019.1)

Compact view
c00004_NZ_CABK.. - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 74,946 - 116,058 nt. (total: 41,113 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001962.1 |  | 0.35 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001938.1 |  | 0.34 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001077.1 |  | 0.26 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0001831.1 |  | 0.24 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001334.1 |  | 0.17 | Alkaloid | caldoniamide A, cladoniamide B, cladoniamide C7, cladoniamide D, cladoniamide E, cladoniamide F, cladoniamide G | Streptomyces uncialis
BGC0000913.1 |  | 0.17 | Other | MK-8 | Enterobacter cloacae
BGC0001333.1 |  | 0.17 | Alkaloid | BE-54017 | uncultured bacterium AB1650
BGC0001440.1 |  | 0.16 | Other | cystargolide A, cystargolide B | Kitasatospora cystarginea
BGC0001412.1 |  | 0.16 | Saccharide | polysaccharide C | Bacteroides fragilis
BGC0002012.1 |  | 0.15 | Polyketide | julichrome Q3-3, julichrome Q3-5 | Streptomyces afghaniensis 772

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001962.1 |  | 0.68 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001938.1 |  | 0.67 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001077.1 |  | 0.59 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0001831.1 |  | 0.58 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001334.1 |  | 0.49 | Alkaloid | caldoniamide A, cladoniamide B, cladoniamide C7, cladoniamide D, cladoniamide E, cladoniamide F, cladoniamide G | Streptomyces uncialis
BGC0000913.1 |  | 0.48 | Other | MK-8 | Enterobacter cloacae
BGC0001333.1 |  | 0.48 | Alkaloid | BE-54017 | uncultured bacterium AB1650
BGC0001440.1 |  | 0.47 | Other | cystargolide A, cystargolide B | Kitasatospora cystarginea
BGC0001412.1 |  | 0.47 | Saccharide | polysaccharide C | Bacteroides fragilis
BGC0002012.1 |  | 0.46 | Polyketide | julichrome Q3-3, julichrome Q3-5 | Streptomyces afghaniensis 772

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00004_NZ_CABK.. - Region 2 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 222,259 - 232,651 nt. (total: 10,393 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000855.1 |  | 0.40 | Other | ectoine | Methylomicrobium kenyense
BGC0000852.1 |  | 0.37 | Other | ectoine | Sporosarcina pasteurii
BGC0000853.1 |  | 0.34 | Other | ectoine | Streptomyces anulatus
BGC0000857.1 |  | 0.33 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.33 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000859.1 |  | 0.33 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.32 | Other | ectoine | Methylophaga thalassica
BGC0000858.1 |  | 0.32 | Other | ectoine | Methylobacter marinus
BGC0000860.1 |  | 0.26 | Other | ectoine | Methylarcula marina
BGC0000919.1 |  | 0.14 | Other | phaseolotoxin | Pseudomonas syringae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000855.1 |  | 0.72 | Other | ectoine | Methylomicrobium kenyense
BGC0000852.1 |  | 0.70 | Other | ectoine | Sporosarcina pasteurii
BGC0000853.1 |  | 0.67 | Other | ectoine | Streptomyces anulatus
BGC0000857.1 |  | 0.66 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.66 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000859.1 |  | 0.66 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.66 | Other | ectoine | Methylophaga thalassica
BGC0000858.1 |  | 0.66 | Other | ectoine | Methylobacter marinus
BGC0000860.1 |  | 0.60 | Other | ectoine | Methylarcula marina
BGC0000919.1 |  | 0.43 | Other | phaseolotoxin | Pseudomonas syringae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00007_NZ_CABK.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 68,288 - 89,181 nt. (total: 20,894 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000650.1 |  | 0.25 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000648.1 |  | 0.24 | Terpene | carotenoid | Myxococcus xanthus
BGC0000637.1 |  | 0.20 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000634.1 |  | 0.17 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0001607.1 |  | 0.16 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0000563.1 |  | 0.16 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0001551.1 |  | 0.16 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001783.1 |  | 0.15 | Other | streptonigrin | Streptomyces flocculus
BGC0001765.1 |  | 0.15 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0000664.1 |  | 0.15 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000650.1 |  | 0.59 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000648.1 |  | 0.57 | Terpene | carotenoid | Myxococcus xanthus
BGC0000637.1 |  | 0.53 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000634.1 |  | 0.48 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0001607.1 |  | 0.47 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0000563.1 |  | 0.47 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0001551.1 |  | 0.46 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001783.1 |  | 0.46 | Other | streptonigrin | Streptomyces flocculus
BGC0001765.1 |  | 0.45 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0000664.1 |  | 0.45 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names