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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP007446.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene | 494,170 | 537,785 | APE Ec | Other | 26%
Region 2 | terpene | 1,127,841 | 1,148,644 |

NZ_CP007446.1 - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 494,170 - 537,785 nt. (total: 43,616 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000836.1 |  | 0.27 | Other | APE Ec | Escherichia coli CFT073
BGC0002008.1 |  | 0.25 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000231.1 |  | 0.24 | Polyketide | griseusin | Streptomyces griseus
BGC0001723.1 |  | 0.23 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0001197.1 |  | 0.23 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001075.1 |  | 0.22 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000904.1 |  | 0.22 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000272.1 |  | 0.21 | Polyketide | spore pigment | Streptomyces collinus
BGC0000228.1 |  | 0.21 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001366.1 |  | 0.21 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000836.1 |  | 0.61 | Other | APE Ec | Escherichia coli CFT073
BGC0002008.1 |  | 0.58 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000231.1 |  | 0.57 | Polyketide | griseusin | Streptomyces griseus
BGC0001723.1 |  | 0.56 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0001197.1 |  | 0.56 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001075.1 |  | 0.55 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000904.1 |  | 0.55 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000272.1 |  | 0.54 | Polyketide | spore pigment | Streptomyces collinus
BGC0000228.1 |  | 0.54 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001366.1 |  | 0.53 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP007446.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,127,841 - 1,148,644 nt. (total: 20,804 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001891.1 |  | 0.17 | Other | closthioamide | Ruminiclostridium cellulolyticum H10
BGC0001743.1 |  | 0.16 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000504.1 |  | 0.16 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001210.1 |  | 0.16 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001579.1 |  | 0.16 | RiPP | duramycin | Streptomyces cinnamoneus
BGC0000883.1 |  | 0.15 | Other | arginomycin | Streptomyces arginensis
BGC0000563.1 |  | 0.15 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000626.1 |  | 0.15 | RiPP | thuricin | Bacillus thuringiensis
BGC0001779.1 |  | 0.15 | RiPP | siamycin | Streptomyces nodosus
BGC0000521.1 |  | 0.15 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001891.1 |  | 0.48 | Other | closthioamide | Ruminiclostridium cellulolyticum H10
BGC0001743.1 |  | 0.46 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000504.1 |  | 0.46 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001210.1 |  | 0.46 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001579.1 |  | 0.46 | RiPP | duramycin | Streptomyces cinnamoneus
BGC0000883.1 |  | 0.46 | Other | arginomycin | Streptomyces arginensis
BGC0000563.1 |  | 0.46 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000626.1 |  | 0.46 | RiPP | thuricin | Bacillus thuringiensis
BGC0001779.1 |  | 0.45 | RiPP | siamycin | Streptomyces nodosus
BGC0000521.1 |  | 0.45 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names