GCF_000723465.1_Rb803_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_HF545616.1

Region	Type	From	To
Region 1.1	cyclic-lactone-autoinducer	170,331	192,431
Region 1.2	cyclic-lactone-autoinducer	257,368	276,265
Region 1.3	ranthipeptide	1,202,127	1,223,762
Region 1.4	cyclic-lactone-autoinducer	1,386,354	1,407,060

NZ_HF545617.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	cyclic-lactone-autoinducer	622,654	649,027

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	170,331	192,431
Region 1.2	cyclic-lactone-autoinducer	257,368	276,265
Region 1.3	ranthipeptide	1,202,127	1,223,762
Region 1.4	cyclic-lactone-autoinducer	1,386,354	1,407,060
Region 2.1	cyclic-lactone-autoinducer	622,654	649,027

Compact view

NZ_HF545616.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 170,331 - 192,431 nt. (total: 22,101 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_HF545616.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 257,368 - 276,265 nt. (total: 18,898 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000780.1	0.17	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000488.1	0.16	RiPP	circularin A	Clostridium beijerinckii
BGC0000548.1	0.15	RiPP	salivaricin A	Streptococcus salivarius
BGC0000558.1	0.15	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001120.1	0.15	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0000916.1	0.14	Other	molybdenum cofactor	Staphylococcus carnosus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000780.1	0.49	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000488.1	0.46	RiPP	circularin A	Clostridium beijerinckii
BGC0000548.1	0.46	RiPP	salivaricin A	Streptococcus salivarius
BGC0000558.1	0.45	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001120.1	0.45	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000703.1	0.44	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001928.1	0.44	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000294.1	0.44	NRP	acinetobactin	Acinetobacter baumannii
BGC0000916.1	0.44	Other	molybdenum cofactor	Staphylococcus carnosus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_HF545616.1 - Region 3 - ranthipeptide

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Location: 1,202,127 - 1,223,762 nt. (total: 21,636 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000350.1	0.07	NRP	ET-743	uncultured organism
BGC0001739.1	0.07	Other	phosphonoacetic Acid	Streptomyces sp. NRRL F-525
BGC0000261.1	0.06	Polyketide	R1128	Streptomyces sp. R1128
BGC0001940.1	0.06	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000937.1	0.06	Other	fosfazinomycin A	Streptomyces sp. WM6372
BGC0001127.1	0.05	NRP	jagaricin	Janthinobacterium agaricidamnosum
BGC0000070.1	0.05	Polyketide	griseofulvin, epidechlorogriseofulvin, norlichexanthone, dehydrogriseofulvin, 4-desmethylgriseofulvin, griseoxanthone B	Penicillium aethiopicum
BGC0001497.1	0.05	Polyketide	actinonin	Streptomyces sp.
BGC0001442.1	0.05	NRP	actinonin	Streptomyces sp. strain ATCC 14903
BGC0001904.1	0.05	Polyketide	fluostatin	Micromonospora rosaria

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000350.1	0.29	NRP	ET-743	uncultured organism
BGC0001739.1	0.27	Other	phosphonoacetic Acid	Streptomyces sp. NRRL F-525
BGC0000261.1	0.26	Polyketide	R1128	Streptomyces sp. R1128
BGC0001940.1	0.26	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000937.1	0.25	Other	fosfazinomycin A	Streptomyces sp. WM6372
BGC0001127.1	0.23	NRP	jagaricin	Janthinobacterium agaricidamnosum
BGC0000070.1	0.22	Polyketide	griseofulvin, epidechlorogriseofulvin, norlichexanthone, dehydrogriseofulvin, 4-desmethylgriseofulvin, griseoxanthone B	Penicillium aethiopicum
BGC0001497.1	0.22	Polyketide	actinonin	Streptomyces sp.
BGC0001442.1	0.22	NRP	actinonin	Streptomyces sp. strain ATCC 14903
BGC0001904.1	0.21	Polyketide	fluostatin	Micromonospora rosaria

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_HF545616.1 - Region 4 - cyclic-lactone-autoinducer

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Location: 1,386,354 - 1,407,060 nt. (total: 20,707 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001743.1	0.15	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000243.1	0.14	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0001891.1	0.14	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001540.1	0.14	Other	CC-1065	Streptomyces zelensis
BGC0000703.1	0.13	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001484.1	0.13	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0001607.1	0.13	Other	gilvusmycin	Streptomyces sp. NRRL B-1347

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.47	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001743.1	0.46	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000243.1	0.43	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0001891.1	0.43	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001540.1	0.43	Other	CC-1065	Streptomyces zelensis
BGC0000703.1	0.42	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001484.1	0.42	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0001607.1	0.42	Other	gilvusmycin	Streptomyces sp. NRRL B-1347

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_HF545617.1 - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

Download region SVG

Location: 622,654 - 649,027 nt. (total: 26,374 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	cyclic-lactone-autoinducer	Similarity score	Type	Compound(s)	Organism
BGC0000624.1		0.12	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001692.1		0.06	NRP	nematophin	Xenorhabdus nematophila ATCC 19061

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0000624.1		0.40	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001692.1		0.25	NRP	nematophin	Xenorhabdus nematophila ATCC 19061

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names