GCF_000169255.2_ASM16925v2_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AAXG02000012 (original name was: NZ_AAXG02000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	ranthipeptide	148,845	170,522

NZ_AAXG02000007 (original name was: NZ_AAXG02000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	thiopeptide	22,477	52,013

NZ_AAXG02000002 (original name was: NZ_AAXG02000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	RRE-containing	10,595	30,855

Region	Type	From	To	Similarity
Region 53.1	ranthipeptide	148,845	170,522
Region 58.1	thiopeptide	22,477	52,013
Region 62.1	RRE-containing	10,595	30,855

No secondary metabolite regions were found in these records:: NZ_AAXG02000066 (original name was: NZ_AAXG02000066.1); NZ_AAXG02000065 (original name was: NZ_AAXG02000065.1); NZ_AAXG02000064 (original name was: NZ_AAXG02000064.1); NZ_AAXG02000063 (original name was: NZ_AAXG02000063.1); NZ_AAXG02000062 (original name was: NZ_AAXG02000062.1); NZ_AAXG02000061 (original name was: NZ_AAXG02000061.1); NZ_AAXG02000060 (original name was: NZ_AAXG02000060.1); NZ_AAXG02000059 (original name was: NZ_AAXG02000059.1); NZ_AAXG02000058 (original name was: NZ_AAXG02000058.1); NZ_AAXG02000057 (original name was: NZ_AAXG02000057.1); NZ_AAXG02000056 (original name was: NZ_AAXG02000056.1); NZ_AAXG02000055 (original name was: NZ_AAXG02000055.1); NZ_AAXG02000054 (original name was: NZ_AAXG02000054.1); NZ_AAXG02000053 (original name was: NZ_AAXG02000053.1); NZ_AAXG02000052 (original name was: NZ_AAXG02000052.1); NZ_AAXG02000051 (original name was: NZ_AAXG02000051.1); NZ_AAXG02000050 (original name was: NZ_AAXG02000050.1); NZ_AAXG02000049 (original name was: NZ_AAXG02000049.1); NZ_AAXG02000048 (original name was: NZ_AAXG02000048.1); NZ_AAXG02000047 (original name was: NZ_AAXG02000047.1); NZ_AAXG02000046 (original name was: NZ_AAXG02000046.1); NZ_AAXG02000045 (original name was: NZ_AAXG02000045.1); NZ_AAXG02000044 (original name was: NZ_AAXG02000044.1); NZ_AAXG02000043 (original name was: NZ_AAXG02000043.1); NZ_AAXG02000042 (original name was: NZ_AAXG02000042.1); NZ_AAXG02000041 (original name was: NZ_AAXG02000041.1); NZ_AAXG02000040 (original name was: NZ_AAXG02000040.1); NZ_AAXG02000038 (original name was: NZ_AAXG02000038.1); NZ_AAXG02000037 (original name was: NZ_AAXG02000037.1); NZ_AAXG02000036 (original name was: NZ_AAXG02000036.1); NZ_AAXG02000035 (original name was: NZ_AAXG02000035.1); NZ_AAXG02000034 (original name was: NZ_AAXG02000034.1); NZ_AAXG02000033 (original name was: NZ_AAXG02000033.1); NZ_AAXG02000032 (original name was: NZ_AAXG02000032.1); NZ_AAXG02000031 (original name was: NZ_AAXG02000031.1); NZ_AAXG02000030 (original name was: NZ_AAXG02000030.1); NZ_AAXG02000029 (original name was: NZ_AAXG02000029.1); NZ_AAXG02000028 (original name was: NZ_AAXG02000028.1); NZ_AAXG02000027 (original name was: NZ_AAXG02000027.1); NZ_AAXG02000026 (original name was: NZ_AAXG02000026.1); NZ_AAXG02000025 (original name was: NZ_AAXG02000025.1); NZ_AAXG02000024 (original name was: NZ_AAXG02000024.1); NZ_AAXG02000023 (original name was: NZ_AAXG02000023.1); NZ_AAXG02000022 (original name was: NZ_AAXG02000022.1); NZ_AAXG02000020 (original name was: NZ_AAXG02000020.1); NZ_AAXG02000019 (original name was: NZ_AAXG02000019.1); NZ_AAXG02000018 (original name was: NZ_AAXG02000018.1); NZ_AAXG02000017 (original name was: NZ_AAXG02000017.1); NZ_AAXG02000016 (original name was: NZ_AAXG02000016.1); NZ_AAXG02000015 (original name was: NZ_AAXG02000015.1); NZ_AAXG02000014 (original name was: NZ_AAXG02000014.1); NZ_AAXG02000013 (original name was: NZ_AAXG02000013.1); NZ_AAXG02000011 (original name was: NZ_AAXG02000011.1); NZ_AAXG02000010 (original name was: NZ_AAXG02000010.1); NZ_AAXG02000009 (original name was: NZ_AAXG02000009.1); NZ_AAXG02000008 (original name was: NZ_AAXG02000008.1); NZ_AAXG02000006 (original name was: NZ_AAXG02000006.1); NZ_AAXG02000005 (original name was: NZ_AAXG02000005.1); NZ_AAXG02000004 (original name was: NZ_AAXG02000004.1); NZ_AAXG02000001 (original name was: NZ_AAXG02000001.1)

Compact view

c00053_NZ_AAXG.. - Region 1 - ranthipeptide

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Location: 148,845 - 170,522 nt. (total: 21,678 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000788.1	0.13	Saccharide	O-antigen	Salmonella enterica subsp. salamae serovar Greenside
BGC0000777.1	0.13	Saccharide	lipopolysaccharide	Escherichia coli
BGC0000787.1	0.13	Saccharide	O-antigen	Escherichia coli
BGC0000799.1	0.13	Saccharide	colanic acid	Escherichia coli
BGC0000773.1	0.13	Saccharide	lipopolysaccharide	Escherichia coli
BGC0000780.1	0.13	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0000599.1	0.11	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000695.1	0.06	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000807.1	0.05	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0001005.1	0.04	NRP, Polyketide	locillomycin	Bacillus subtilis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000788.1	0.42	Saccharide	O-antigen	Salmonella enterica subsp. salamae serovar Greenside
BGC0000777.1	0.42	Saccharide	lipopolysaccharide	Escherichia coli
BGC0000787.1	0.42	Saccharide	O-antigen	Escherichia coli
BGC0000799.1	0.42	Saccharide	colanic acid	Escherichia coli
BGC0000773.1	0.42	Saccharide	lipopolysaccharide	Escherichia coli
BGC0000780.1	0.41	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0000599.1	0.37	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000695.1	0.25	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000807.1	0.23	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0001005.1	0.17	NRP, Polyketide	locillomycin	Bacillus subtilis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00058_NZ_AAXG.. - Region 1 - thiopeptide

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Location: 22,477 - 52,013 nt. (total: 29,537 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000599.1	0.23	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000842.1	0.12	Other (Non-NRP beta-lactam)	carbapenem MM4550	Streptomyces argenteolus
BGC0000847.1	0.11	Other (Non-NRP beta-lactam)	thienamycin	Streptomyces cattleya
BGC0001285.1	0.10	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0001413.1	0.06	NRP	cystobactamide	Cystobacter sp. Cbv34
BGC0000118.1	0.06	Polyketide	pactamycin	Streptomyces pactum
BGC0000434.1	0.05	NRP	SW-163C, UK-63598, SW-163E, SW-163F, SW-163G	Streptomyces sp. SNA15896
BGC0000119.1	0.05	Polyketide, Saccharide	7-deoxypactamycin	Streptomyces pactum
BGC0000949.1	0.05	NRP	A-500359 A, A-500359 B	Streptomyces griseus
BGC0000288.1	0.05	NRP	A-503083 A, A-503083 B, A-503083 E, A-503083 F	Streptomyces sp. SANK 62799

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000599.1	0.56	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000842.1	0.39	Other (Non-NRP beta-lactam)	carbapenem MM4550	Streptomyces argenteolus
BGC0000847.1	0.39	Other (Non-NRP beta-lactam)	thienamycin	Streptomyces cattleya
BGC0001285.1	0.36	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0001413.1	0.25	NRP	cystobactamide	Cystobacter sp. Cbv34
BGC0000118.1	0.25	Polyketide	pactamycin	Streptomyces pactum
BGC0000434.1	0.23	NRP	SW-163C, UK-63598, SW-163E, SW-163F, SW-163G	Streptomyces sp. SNA15896
BGC0000119.1	0.22	Polyketide, Saccharide	7-deoxypactamycin	Streptomyces pactum
BGC0000949.1	0.22	NRP	A-500359 A, A-500359 B	Streptomyces griseus
BGC0000288.1	0.21	NRP	A-503083 A, A-503083 B, A-503083 E, A-503083 F	Streptomyces sp. SANK 62799

Similar known gene clusters

No matches found.

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Thiopeptides

Core peptide predictions

No core peptides found.

c00062_NZ_AAXG.. - Region 1 - RRE-containing

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Location: 10,595 - 30,855 nt. (total: 20,261 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000797.1	0.17	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0000785.1	0.16	Saccharide	O-antigen	Burkholderia mallei
BGC0000782.1	0.16	Saccharide	O-antigen	Burkholderia pseudomallei 1026b
BGC0000868.1	0.16	Other	teichuronic acid	Bacillus subtilis subsp. subtilis str. 168
BGC0000768.1	0.16	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0001588.1	0.16	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000759.1	0.16	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159
BGC0000799.1	0.16	Saccharide	colanic acid	Escherichia coli
BGC0000761.1	0.16	Saccharide	exopolysaccharide	Methylobacillus sp. 12S
BGC0000728.1	0.15	Saccharide	capsular polysaccharide	Klebsiella pneumoniae subsp. ozaenae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000797.1	0.48	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0000785.1	0.47	Saccharide	O-antigen	Burkholderia mallei
BGC0000782.1	0.47	Saccharide	O-antigen	Burkholderia pseudomallei 1026b
BGC0000868.1	0.47	Other	teichuronic acid	Bacillus subtilis subsp. subtilis str. 168
BGC0000768.1	0.47	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0001588.1	0.47	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000759.1	0.47	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159
BGC0000799.1	0.46	Saccharide	colanic acid	Escherichia coli
BGC0000761.1	0.46	Saccharide	exopolysaccharide	Methylobacillus sp. 12S
BGC0000728.1	0.46	Saccharide	capsular polysaccharide	Klebsiella pneumoniae subsp. ozaenae

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names