Select genomic region:
Overview
3.1
3.2
4.1
4.2
6.1
8.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_HE978602.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | RiPP-like | 171,867 | 182,670 |
Region 3.2 | terpene | 240,412 | 261,413 | carotenoid | Terpene | 33%

NZ_HE978603.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | betalactone | 73,585 | 104,971 |
Region 4.2 | terpene | 268,047 | 288,961 |

NZ_HE978605.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 6.1 | ectoine | 121,373 | 131,777 | ectoine | Other | 75%

NZ_HE978607.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 8.1 | NAPAA | 81,751 | 120,703 | ulleungmycin | NRP | 5%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | RiPP-like | 171,867 | 182,670 |
Region 3.2 | terpene | 240,412 | 261,413 | carotenoid | Terpene | 33%
Region 4.1 | betalactone | 73,585 | 104,971 |
Region 4.2 | terpene | 268,047 | 288,961 |
Region 6.1 | ectoine | 121,373 | 131,777 | ectoine | Other | 75%
Region 8.1 | NAPAA | 81,751 | 120,703 | ulleungmycin | NRP | 5%

No secondary metabolite regions were found in these records:
  NZ_HE978600.1
  NZ_HE978601.1
  NZ_HE978604.1
  NZ_HE978606.1
  NZ_HE978608.1
  NZ_HE978609.1
  NZ_HE978610.1
  NZ_HE978611.1
  NZ_HE978612.1
  NZ_HE978613.1
  NZ_HE978614.1
  NZ_HE978615.1
  NZ_CAHK01000065 (original name was: NZ_CAHK01000065.1)

Compact view
NZ_HE978602.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 171,867 - 182,670 nt. (total: 10,804 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001521.1 |  | 0.15 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000019.1 |  | 0.15 | Polyketide | angolamycin | Streptomyces eurythermus
BGC0000703.1 |  | 0.14 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000698.1 |  | 0.14 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0001138.1 |  | 0.14 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0001607.1 |  | 0.14 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0001484.1 |  | 0.14 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0001488.1 |  | 0.13 | Other | 4-formylaminooxyvinylglycine | Pseudomonas fluorescens WH6
BGC0000882.1 |  | 0.13 | Other | mildiomycin | Streptomyces rimofaciens
BGC0000801.1 |  | 0.13 | Saccharide | galactoglucan | Sinorhizobium meliloti

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001521.1 |  | 0.45 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000019.1 |  | 0.45 | Polyketide | angolamycin | Streptomyces eurythermus
BGC0000703.1 |  | 0.44 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000698.1 |  | 0.44 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0001138.1 |  | 0.43 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0001607.1 |  | 0.43 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0001484.1 |  | 0.43 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0001488.1 |  | 0.42 | Other | 4-formylaminooxyvinylglycine | Pseudomonas fluorescens WH6
BGC0000882.1 |  | 0.42 | Other | mildiomycin | Streptomyces rimofaciens
BGC0000801.1 |  | 0.42 | Saccharide | galactoglucan | Sinorhizobium meliloti

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE978602.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 240,412 - 261,413 nt. (total: 21,002 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.32 | Terpene | carotenoid | Myxococcus xanthus
BGC0000644.1 |  | 0.30 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000637.1 |  | 0.28 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000650.1 |  | 0.25 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0001227.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000640.1 |  | 0.19 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0001456.1 |  | 0.18 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000664.1 |  | 0.18 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000636.1 |  | 0.18 | Terpene | carotenoid | Brevibacterium linens
BGC0000886.1 |  | 0.18 | Other | allylmalonyl-CoA | Streptomyces tsukubensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.65 | Terpene | carotenoid | Myxococcus xanthus
BGC0000644.1 |  | 0.64 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000637.1 |  | 0.62 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000650.1 |  | 0.58 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0001227.1 |  | 0.54 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000640.1 |  | 0.51 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0001456.1 |  | 0.50 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000664.1 |  | 0.50 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000636.1 |  | 0.50 | Terpene | carotenoid | Brevibacterium linens
BGC0000886.1 |  | 0.50 | Other | allylmalonyl-CoA | Streptomyces tsukubensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE978603.1 - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 73,585 - 104,971 nt. (total: 31,387 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000666.1 |  | 0.28 | Terpene | xiamycin A | Streptomyces sp. SCSIO 02999
BGC0000665.1 |  | 0.28 | Terpene, Alkaloid | xiamycin | Streptomyces sp. HKI0576
BGC0001156.1 |  | 0.28 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.28 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000904.1 |  | 0.25 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000663.1 |  | 0.20 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0000258.1 |  | 0.18 | Polyketide | prodigiosin | Serratia sp.
BGC0000259.1 |  | 0.18 | Polyketide | prodigiosin | Serratia marcescens
BGC0000260.1 |  | 0.15 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0002036.1 |  | 0.15 | Other | dehydrofosmidomycin | Streptomyces lavendulae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000666.1 |  | 0.62 | Terpene | xiamycin A | Streptomyces sp. SCSIO 02999
BGC0000665.1 |  | 0.62 | Terpene, Alkaloid | xiamycin | Streptomyces sp. HKI0576
BGC0001156.1 |  | 0.61 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.61 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000904.1 |  | 0.58 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000663.1 |  | 0.52 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0000258.1 |  | 0.50 | Polyketide | prodigiosin | Serratia sp.
BGC0000259.1 |  | 0.49 | Polyketide | prodigiosin | Serratia marcescens
BGC0000260.1 |  | 0.45 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0002036.1 |  | 0.45 | Other | dehydrofosmidomycin | Streptomyces lavendulae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE978603.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 268,047 - 288,961 nt. (total: 20,915 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000650.1 |  | 0.33 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000596.1 |  | 0.18 | RiPP | SLI-2138 | Streptomyces lividans TK24
BGC0000595.1 |  | 0.18 | RiPP | SCO-2138 | Streptomyces coelicolor A3(2)
BGC0000633.1 |  | 0.17 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001456.1 |  | 0.17 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0001150.1 |  | 0.17 | Polyketide | pamamycin-607 | Streptomyces alboniger
BGC0000644.1 |  | 0.16 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000637.1 |  | 0.16 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000243.1 |  | 0.15 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000906.1 |  | 0.14 | Other | heme D1 | Heliophilum fasciatum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000650.1 |  | 0.66 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000596.1 |  | 0.50 | RiPP | SLI-2138 | Streptomyces lividans TK24
BGC0000595.1 |  | 0.50 | RiPP | SCO-2138 | Streptomyces coelicolor A3(2)
BGC0000633.1 |  | 0.49 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001456.1 |  | 0.48 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0001150.1 |  | 0.48 | Polyketide | pamamycin-607 | Streptomyces alboniger
BGC0000644.1 |  | 0.47 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000637.1 |  | 0.46 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000243.1 |  | 0.45 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000906.1 |  | 0.43 | Other | heme D1 | Heliophilum fasciatum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
NZ_HE978605.1 - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 121,373 - 131,777 nt. (total: 10,405 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.42 | Other | ectoine | Streptomyces anulatus
BGC0000855.1 |  | 0.40 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.40 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.40 | Other | ectoine | Methylophaga thalassica
BGC0000858.1 |  | 0.39 | Other | ectoine | Methylobacter marinus
BGC0000852.1 |  | 0.38 | Other | ectoine | Sporosarcina pasteurii
BGC0000860.1 |  | 0.31 | Other | ectoine | Methylarcula marina
BGC0000857.1 |  | 0.30 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.28 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000665.1 |  | 0.15 | Terpene, Alkaloid | xiamycin | Streptomyces sp. HKI0576

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000853.1 |  | 0.74 | Other | ectoine | Streptomyces anulatus
BGC0000855.1 |  | 0.72 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.72 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.72 | Other | ectoine | Methylophaga thalassica
BGC0000858.1 |  | 0.71 | Other | ectoine | Methylobacter marinus
BGC0000852.1 |  | 0.71 | Other | ectoine | Sporosarcina pasteurii
BGC0000860.1 |  | 0.64 | Other | ectoine | Methylarcula marina
BGC0000857.1 |  | 0.64 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.62 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000665.1 |  | 0.45 | Terpene, Alkaloid | xiamycin | Streptomyces sp. HKI0576

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_HE978607.1 - Region 1 - NAPAA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 81,751 - 120,703 nt. (total: 38,953 nt) Show pHMM detection rules used
NAPAA: (AMP-binding and PP-binding and TIGR02353)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
NRPS/PKS modules
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | NAPAA | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001302.1 |  | 0.27 | Other | lomofungin | Streptomyces lomondensis
BGC0002008.1 |  | 0.24 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.24 | Other | APE Ec | Escherichia coli CFT073
BGC0000837.1 |  | 0.23 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0000551.1 |  | 0.22 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0001050.1 |  | 0.22 | NRP, Polyketide | thalassospiramide A | Tistrella bauzanensis
BGC0000258.1 |  | 0.22 | Polyketide | prodigiosin | Serratia sp.
BGC0000513.1 |  | 0.22 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0001483.1 |  | 0.22 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0000678.1 |  | 0.22 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001302.1 |  | 0.61 | Other | lomofungin | Streptomyces lomondensis
BGC0002008.1 |  | 0.58 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.58 | Other | APE Ec | Escherichia coli CFT073
BGC0000837.1 |  | 0.56 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0000551.1 |  | 0.55 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0001050.1 |  | 0.55 | NRP, Polyketide | thalassospiramide A | Tistrella bauzanensis
BGC0000258.1 |  | 0.55 | Polyketide | prodigiosin | Serratia sp.
BGC0000513.1 |  | 0.55 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0001483.1 |  | 0.55 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0000678.1 |  | 0.54 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Module view
Shows module structures for each candidate in NRPS- and PKS regions. Genes are shown in predicted order, and are only present when containing at least one complete module. A domain glossary is available here.
Legend
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 81750 - 120703:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg8_83: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (47..422): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAESIGtVvK
    Nearest Stachelhaus code:
      lys
    Stachelhaus code match:
      80% (moderate)
ctg8_87: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (42..460): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    NOTE: outside applicability domain
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      glu, gln
    Single AA prediction:
      gln
  Stachelhaus prediction details:
    Stachelhaus sequence:
      itcaMGGaqK
    Nearest Stachelhaus code:
      phe
    Stachelhaus code match:
      40% (weak)
ctg8_94: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (17..414): X
  NRPSPredictor2: (unknown)
  SVM prediction details:
    Predicted physicochemical class:
      N/A
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      gLTssGgavK
    Nearest Stachelhaus code:
      asn
    Stachelhaus code match:
      40% (weak)