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Overview
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### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP022379.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene | 1,528,899 | 1,569,008 |
Region 2 | arylpolyene | 1,801,299 | 1,840,969 | flexirubin | Polyketide | 8%
Region 3 | arylpolyene | 1,873,171 | 1,914,274 |
Region 4 | resorcinol | 1,960,593 | 2,001,720 | flexirubin | Polyketide | 19%

NZ_CP022379.1 - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,528,899 - 1,569,008 nt. (total: 40,110 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.16 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0001987.1 |  | 0.15 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0001917.1 |  | 0.14 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001897.1 |  | 0.14 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001314.1 |  | 0.14 | Terpene | tirucalla | Arabidopsis thaliana
BGC0000255.1 |  | 0.12 | Polyketide | pederin | Uncultured bacterium
BGC0000272.1 |  | 0.11 | Polyketide | spore pigment | Streptomyces collinus
BGC0001244.1 |  | 0.11 | Polyketide | (-)-Mellein | Parastagonospora nodorum
BGC0001275.1 |  | 0.11 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis
BGC0001273.1 |  | 0.11 | Polyketide | asperlactone | Aspergillus ochraceus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.47 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0001987.1 |  | 0.45 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0001917.1 |  | 0.44 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001897.1 |  | 0.44 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001314.1 |  | 0.43 | Terpene | tirucalla | Arabidopsis thaliana
BGC0000255.1 |  | 0.39 | Polyketide | pederin | Uncultured bacterium
BGC0000272.1 |  | 0.38 | Polyketide | spore pigment | Streptomyces collinus
BGC0001244.1 |  | 0.37 | Polyketide | (-)-Mellein | Parastagonospora nodorum
BGC0001275.1 |  | 0.37 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis
BGC0001273.1 |  | 0.37 | Polyketide | asperlactone | Aspergillus ochraceus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP022379.1 - Region 2 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,801,299 - 1,840,969 nt. (total: 39,671 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000272.1 |  | 0.19 | Polyketide | spore pigment | Streptomyces collinus
BGC0001465.1 |  | 0.18 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000890.1 |  | 0.18 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.18 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000248.1 |  | 0.17 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000234.1 |  | 0.17 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000231.1 |  | 0.17 | Polyketide | griseusin | Streptomyces griseus
BGC0001197.1 |  | 0.17 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000228.1 |  | 0.16 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001366.1 |  | 0.16 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000272.1 |  | 0.50 | Polyketide | spore pigment | Streptomyces collinus
BGC0001465.1 |  | 0.50 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000890.1 |  | 0.49 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.49 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0000248.1 |  | 0.48 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000234.1 |  | 0.48 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000231.1 |  | 0.48 | Polyketide | griseusin | Streptomyces griseus
BGC0001197.1 |  | 0.47 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000228.1 |  | 0.47 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001366.1 |  | 0.47 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP022379.1 - Region 3 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,873,171 - 1,914,274 nt. (total: 41,104 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001210.1 |  | 0.16 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001863.1 |  | 0.16 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000500.1 |  | 0.15 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000504.1 |  | 0.15 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001120.1 |  | 0.15 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000703.1 |  | 0.14 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001484.1 |  | 0.14 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0001684.1 |  | 0.14 | Other | N-acyloxyacyl glutamine | Klebsiella variicola
BGC0000916.1 |  | 0.14 | Other | molybdenum cofactor | Staphylococcus carnosus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001210.1 |  | 0.47 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001863.1 |  | 0.46 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000500.1 |  | 0.46 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000504.1 |  | 0.46 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001120.1 |  | 0.45 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000703.1 |  | 0.43 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001484.1 |  | 0.43 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0001684.1 |  | 0.43 | Other | N-acyloxyacyl glutamine | Klebsiella variicola
BGC0000916.1 |  | 0.43 | Other | molybdenum cofactor | Staphylococcus carnosus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP022379.1 - Region 4 - resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,960,593 - 2,001,720 nt. (total: 41,128 nt) Show pHMM detection rules used
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000783.1 |  | 0.18 | Saccharide | O-antigen | Xanthomonas oryzae pv. oryzae
BGC0000774.1 |  | 0.17 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001526.1 |  | 0.17 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001525.1 |  | 0.16 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000886.1 |  | 0.16 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0000815.1 |  | 0.14 | Alkaloid | loline | Epichloe uncinata
BGC0000457.1 |  | 0.11 | NRP | vicibactin | Rhizobium etli CFN 42
BGC0002008.1 |  | 0.10 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0001312.1 |  | 0.09 | NRP | viscosin | Pseudomonas fluorescens SBW25
BGC0001190.1 |  | 0.08 | Polyketide | fusaric acid | Fusarium verticillioides 7600

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000783.1 |  | 0.49 | Saccharide | O-antigen | Xanthomonas oryzae pv. oryzae
BGC0000774.1 |  | 0.48 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0001526.1 |  | 0.48 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001525.1 |  | 0.47 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000886.1 |  | 0.47 | Other | allylmalonyl-CoA | Streptomyces tsukubensis
BGC0000815.1 |  | 0.44 | Alkaloid | loline | Epichloe uncinata
BGC0000457.1 |  | 0.38 | NRP | vicibactin | Rhizobium etli CFN 42
BGC0002008.1 |  | 0.35 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0001312.1 |  | 0.33 | NRP | viscosin | Pseudomonas fluorescens SBW25
BGC0001190.1 |  | 0.32 | Polyketide | fusaric acid | Fusarium verticillioides 7600

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names