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Overview
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1.2
1.3
1.4

### Identified secondary metabolite regions using strictness 'relaxed'

NC_013162.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | resorcinol | 663,783 | 704,910 | flexirubin | Polyketide | 16%
Region 2 | arylpolyene | 872,548 | 916,398 | flexirubin | Polyketide | 11%
Region 3 | arylpolyene | 994,595 | 1,033,874 |
Region 4 | arylpolyene | 1,511,158 | 1,552,246 |

NC_013162.1 - Region 1 - resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 663,783 - 704,910 nt. (total: 41,128 nt) Show pHMM detection rules used
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001526.1 |  | 0.16 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001210.1 |  | 0.16 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001863.1 |  | 0.16 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000528.1 |  | 0.16 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001576.1 |  | 0.16 | RiPP | divamide A | Prochloron didemni
BGC0000592.1 |  | 0.15 | RiPP | microviridin B | Microcystis aeruginosa NIES-298
BGC0000527.1 |  | 0.15 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0001787.1 |  | 0.15 | RiPP | suicin 3908 | Streptococcus suis
BGC0001779.1 |  | 0.15 | RiPP | siamycin | Streptomyces nodosus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001526.1 |  | 0.47 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001210.1 |  | 0.46 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001863.1 |  | 0.46 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000528.1 |  | 0.46 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001576.1 |  | 0.46 | RiPP | divamide A | Prochloron didemni
BGC0000592.1 |  | 0.46 | RiPP | microviridin B | Microcystis aeruginosa NIES-298
BGC0000527.1 |  | 0.46 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0001787.1 |  | 0.46 | RiPP | suicin 3908 | Streptococcus suis
BGC0001779.1 |  | 0.45 | RiPP | siamycin | Streptomyces nodosus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_013162.1 - Region 2 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 872,548 - 916,398 nt. (total: 43,851 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000272.1 |  | 0.21 | Polyketide | spore pigment | Streptomyces collinus
BGC0000248.1 |  | 0.21 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0001465.1 |  | 0.20 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000231.1 |  | 0.20 | Polyketide | griseusin | Streptomyces griseus
BGC0000890.1 |  | 0.20 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.19 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0001947.1 |  | 0.19 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000234.1 |  | 0.19 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000760.1 |  | 0.19 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001197.1 |  | 0.19 | Polyketide | frankiamicin | Frankia sp. EAN1pec

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000272.1 |  | 0.54 | Polyketide | spore pigment | Streptomyces collinus
BGC0000248.1 |  | 0.54 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0001465.1 |  | 0.52 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0000231.1 |  | 0.52 | Polyketide | griseusin | Streptomyces griseus
BGC0000890.1 |  | 0.52 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas phenolica O-BC30
BGC0000891.1 |  | 0.52 | Other (Aminocoumarin) | pentabromopseudilin | Pseudoalteromonas luteoviolacea 2ta16
BGC0001947.1 |  | 0.51 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000234.1 |  | 0.51 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000760.1 |  | 0.51 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001197.1 |  | 0.51 | Polyketide | frankiamicin | Frankia sp. EAN1pec

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_013162.1 - Region 3 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 994,595 - 1,033,874 nt. (total: 39,280 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.16 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0001917.1 |  | 0.16 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001987.1 |  | 0.15 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0001219.1 |  | 0.13 | Polyketide | shanorellin | Chaetomium globosum CBS 148.51
BGC0001244.1 |  | 0.11 | Polyketide | (-)-Mellein | Parastagonospora nodorum
BGC0001273.1 |  | 0.11 | Polyketide | asperlactone | Aspergillus ochraceus
BGC0001275.1 |  | 0.11 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis
BGC0001276.1 |  | 0.11 | Polyketide | 6-methylsalicyclic acid | Aspergillus terreus
BGC0001897.1 |  | 0.08 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000255.1 |  | 0.08 | Polyketide | pederin | Uncultured bacterium

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.47 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0001917.1 |  | 0.46 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001987.1 |  | 0.45 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0001219.1 |  | 0.42 | Polyketide | shanorellin | Chaetomium globosum CBS 148.51
BGC0001244.1 |  | 0.38 | Polyketide | (-)-Mellein | Parastagonospora nodorum
BGC0001273.1 |  | 0.37 | Polyketide | asperlactone | Aspergillus ochraceus
BGC0001275.1 |  | 0.37 | Polyketide | 6-methylsalicyclic acid | Glarea lozoyensis
BGC0001276.1 |  | 0.37 | Polyketide | 6-methylsalicyclic acid | Aspergillus terreus
BGC0001897.1 |  | 0.31 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000255.1 |  | 0.30 | Polyketide | pederin | Uncultured bacterium

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_013162.1 - Region 4 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,511,158 - 1,552,246 nt. (total: 41,089 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001361.1 |  | 0.27 | Terpene | sodorifen | Serratia plymuthica 4Rx13
BGC0001538.1 |  | 0.26 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0001444.1 |  | 0.24 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001594.1 |  | 0.24 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0001197.1 |  | 0.24 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001595.1 |  | 0.23 | Alkaloid | fischerindole | Fischerella sp. SAG 46.79
BGC0000668.1 |  | 0.22 | Terpene, Alkaloid | 12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole | Hapalosiphon welwitschii UTEX B 1830
BGC0000880.1 |  | 0.21 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000836.1 |  | 0.21 | Other | APE Ec | Escherichia coli CFT073
BGC0000231.1 |  | 0.21 | Polyketide | griseusin | Streptomyces griseus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001361.1 |  | 0.61 | Terpene | sodorifen | Serratia plymuthica 4Rx13
BGC0001538.1 |  | 0.60 | NRP, Polyketide | caboxamycin | Streptomyces sp. NTK 937
BGC0001444.1 |  | 0.57 | Other | caboxamycin | Streptomyces sp. NTK 937
BGC0001594.1 |  | 0.57 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0001197.1 |  | 0.57 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001595.1 |  | 0.56 | Alkaloid | fischerindole | Fischerella sp. SAG 46.79
BGC0000668.1 |  | 0.55 | Terpene, Alkaloid | 12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole | Hapalosiphon welwitschii UTEX B 1830
BGC0000880.1 |  | 0.54 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000836.1 |  | 0.54 | Other | APE Ec | Escherichia coli CFT073
BGC0000231.1 |  | 0.54 | Polyketide | griseusin | Streptomyces griseus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names