Select genomic region:
Overview
5.1
6.1
101.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00005_NZ_CAUE.. (original name was: NZ_CAUEFJ010000005.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 5.1 | RiPP-like | 62,560 | 69,225 |

c00006_NZ_CAUE.. (original name was: NZ_CAUEFJ010000006.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 6.1 | RRE-containing | 9,539 | 29,847 |

c00101_NZ_CAUE.. (original name was: NZ_CAUEFJ010000101.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 101.1 | cyclic-lactone-autoinducer | 1 | 3,562 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 5.1 | RiPP-like | 62,560 | 69,225 |
Region 6.1 | RRE-containing | 9,539 | 29,847 |
Region 101.1 | cyclic-lactone-autoinducer | 1 | 3,562 |

No secondary metabolite regions were found in these records:
  c00001_NZ_CAUE.. (original name was: NZ_CAUEFJ010000001.1)
  c00002_NZ_CAUE.. (original name was: NZ_CAUEFJ010000002.1)
  c00003_NZ_CAUE.. (original name was: NZ_CAUEFJ010000003.1)
  c00004_NZ_CAUE.. (original name was: NZ_CAUEFJ010000004.1)
  c00007_NZ_CAUE.. (original name was: NZ_CAUEFJ010000007.1)
  c00008_NZ_CAUE.. (original name was: NZ_CAUEFJ010000008.1)
  c00009_NZ_CAUE.. (original name was: NZ_CAUEFJ010000009.1)
  c00010_NZ_CAUE.. (original name was: NZ_CAUEFJ010000010.1)
  c00011_NZ_CAUE.. (original name was: NZ_CAUEFJ010000011.1)
  c00012_NZ_CAUE.. (original name was: NZ_CAUEFJ010000012.1)
  c00013_NZ_CAUE.. (original name was: NZ_CAUEFJ010000013.1)
  c00014_NZ_CAUE.. (original name was: NZ_CAUEFJ010000014.1)
  c00015_NZ_CAUE.. (original name was: NZ_CAUEFJ010000015.1)
  c00016_NZ_CAUE.. (original name was: NZ_CAUEFJ010000016.1)
  c00017_NZ_CAUE.. (original name was: NZ_CAUEFJ010000017.1)
  c00018_NZ_CAUE.. (original name was: NZ_CAUEFJ010000018.1)
  c00019_NZ_CAUE.. (original name was: NZ_CAUEFJ010000019.1)
  c00020_NZ_CAUE.. (original name was: NZ_CAUEFJ010000020.1)
  c00021_NZ_CAUE.. (original name was: NZ_CAUEFJ010000021.1)
  c00022_NZ_CAUE.. (original name was: NZ_CAUEFJ010000022.1)
  c00023_NZ_CAUE.. (original name was: NZ_CAUEFJ010000023.1)
  c00024_NZ_CAUE.. (original name was: NZ_CAUEFJ010000024.1)
  c00025_NZ_CAUE.. (original name was: NZ_CAUEFJ010000025.1)
  c00026_NZ_CAUE.. (original name was: NZ_CAUEFJ010000026.1)
  c00027_NZ_CAUE.. (original name was: NZ_CAUEFJ010000027.1)
  c00028_NZ_CAUE.. (original name was: NZ_CAUEFJ010000028.1)
  c00029_NZ_CAUE.. (original name was: NZ_CAUEFJ010000029.1)
  c00030_NZ_CAUE.. (original name was: NZ_CAUEFJ010000030.1)
  c00031_NZ_CAUE.. (original name was: NZ_CAUEFJ010000031.1)
  c00032_NZ_CAUE.. (original name was: NZ_CAUEFJ010000032.1)
  c00033_NZ_CAUE.. (original name was: NZ_CAUEFJ010000033.1)
  c00034_NZ_CAUE.. (original name was: NZ_CAUEFJ010000034.1)
  c00035_NZ_CAUE.. (original name was: NZ_CAUEFJ010000035.1)
  c00036_NZ_CAUE.. (original name was: NZ_CAUEFJ010000036.1)
  c00037_NZ_CAUE.. (original name was: NZ_CAUEFJ010000037.1)
  c00038_NZ_CAUE.. (original name was: NZ_CAUEFJ010000038.1)
  c00039_NZ_CAUE.. (original name was: NZ_CAUEFJ010000039.1)
  c00040_NZ_CAUE.. (original name was: NZ_CAUEFJ010000040.1)
  c00041_NZ_CAUE.. (original name was: NZ_CAUEFJ010000041.1)
  c00042_NZ_CAUE.. (original name was: NZ_CAUEFJ010000042.1)
  c00043_NZ_CAUE.. (original name was: NZ_CAUEFJ010000043.1)
  c00044_NZ_CAUE.. (original name was: NZ_CAUEFJ010000044.1)
  c00045_NZ_CAUE.. (original name was: NZ_CAUEFJ010000045.1)
  c00046_NZ_CAUE.. (original name was: NZ_CAUEFJ010000046.1)
  c00047_NZ_CAUE.. (original name was: NZ_CAUEFJ010000047.1)
  c00048_NZ_CAUE.. (original name was: NZ_CAUEFJ010000048.1)
  c00049_NZ_CAUE.. (original name was: NZ_CAUEFJ010000049.1)
  c00050_NZ_CAUE.. (original name was: NZ_CAUEFJ010000050.1)
  c00051_NZ_CAUE.. (original name was: NZ_CAUEFJ010000051.1)
  c00052_NZ_CAUE.. (original name was: NZ_CAUEFJ010000052.1)
  c00053_NZ_CAUE.. (original name was: NZ_CAUEFJ010000053.1)
  c00054_NZ_CAUE.. (original name was: NZ_CAUEFJ010000054.1)
  c00055_NZ_CAUE.. (original name was: NZ_CAUEFJ010000055.1)
  c00056_NZ_CAUE.. (original name was: NZ_CAUEFJ010000056.1)
  c00057_NZ_CAUE.. (original name was: NZ_CAUEFJ010000057.1)
  c00058_NZ_CAUE.. (original name was: NZ_CAUEFJ010000058.1)
  c00059_NZ_CAUE.. (original name was: NZ_CAUEFJ010000059.1)
  c00060_NZ_CAUE.. (original name was: NZ_CAUEFJ010000060.1)
  c00061_NZ_CAUE.. (original name was: NZ_CAUEFJ010000061.1)
  c00062_NZ_CAUE.. (original name was: NZ_CAUEFJ010000062.1)
  c00063_NZ_CAUE.. (original name was: NZ_CAUEFJ010000063.1)
  c00064_NZ_CAUE.. (original name was: NZ_CAUEFJ010000064.1)
  c00065_NZ_CAUE.. (original name was: NZ_CAUEFJ010000065.1)
  c00066_NZ_CAUE.. (original name was: NZ_CAUEFJ010000066.1)
  c00067_NZ_CAUE.. (original name was: NZ_CAUEFJ010000067.1)
  c00068_NZ_CAUE.. (original name was: NZ_CAUEFJ010000068.1)
  c00069_NZ_CAUE.. (original name was: NZ_CAUEFJ010000069.1)
  c00070_NZ_CAUE.. (original name was: NZ_CAUEFJ010000070.1)
  c00071_NZ_CAUE.. (original name was: NZ_CAUEFJ010000071.1)
  c00072_NZ_CAUE.. (original name was: NZ_CAUEFJ010000072.1)
  c00073_NZ_CAUE.. (original name was: NZ_CAUEFJ010000073.1)
  c00074_NZ_CAUE.. (original name was: NZ_CAUEFJ010000074.1)
  c00075_NZ_CAUE.. (original name was: NZ_CAUEFJ010000075.1)
  c00076_NZ_CAUE.. (original name was: NZ_CAUEFJ010000076.1)
  c00077_NZ_CAUE.. (original name was: NZ_CAUEFJ010000077.1)
  c00078_NZ_CAUE.. (original name was: NZ_CAUEFJ010000078.1)
  c00079_NZ_CAUE.. (original name was: NZ_CAUEFJ010000079.1)
  c00080_NZ_CAUE.. (original name was: NZ_CAUEFJ010000080.1)
  c00081_NZ_CAUE.. (original name was: NZ_CAUEFJ010000081.1)
  c00082_NZ_CAUE.. (original name was: NZ_CAUEFJ010000082.1)
  c00083_NZ_CAUE.. (original name was: NZ_CAUEFJ010000083.1)
  c00084_NZ_CAUE.. (original name was: NZ_CAUEFJ010000084.1)
  c00085_NZ_CAUE.. (original name was: NZ_CAUEFJ010000085.1)
  c00086_NZ_CAUE.. (original name was: NZ_CAUEFJ010000086.1)
  c00087_NZ_CAUE.. (original name was: NZ_CAUEFJ010000087.1)
  c00088_NZ_CAUE.. (original name was: NZ_CAUEFJ010000088.1)
  c00089_NZ_CAUE.. (original name was: NZ_CAUEFJ010000089.1)
  c00090_NZ_CAUE.. (original name was: NZ_CAUEFJ010000090.1)
  c00091_NZ_CAUE.. (original name was: NZ_CAUEFJ010000091.1)
  c00092_NZ_CAUE.. (original name was: NZ_CAUEFJ010000092.1)
  c00093_NZ_CAUE.. (original name was: NZ_CAUEFJ010000093.1)
  c00094_NZ_CAUE.. (original name was: NZ_CAUEFJ010000094.1)
  c00095_NZ_CAUE.. (original name was: NZ_CAUEFJ010000095.1)
  c00096_NZ_CAUE.. (original name was: NZ_CAUEFJ010000096.1)
  c00097_NZ_CAUE.. (original name was: NZ_CAUEFJ010000097.1)
  c00098_NZ_CAUE.. (original name was: NZ_CAUEFJ010000098.1)
  c00099_NZ_CAUE.. (original name was: NZ_CAUEFJ010000099.1)
  c00100_NZ_CAUE.. (original name was: NZ_CAUEFJ010000100.1)
  c00102_NZ_CAUE.. (original name was: NZ_CAUEFJ010000102.1)
  c00103_NZ_CAUE.. (original name was: NZ_CAUEFJ010000103.1)
  c00104_NZ_CAUE.. (original name was: NZ_CAUEFJ010000104.1)
  c00105_NZ_CAUE.. (original name was: NZ_CAUEFJ010000105.1)
  c00106_NZ_CAUE.. (original name was: NZ_CAUEFJ010000106.1)
  c00107_NZ_CAUE.. (original name was: NZ_CAUEFJ010000107.1)
  c00108_NZ_CAUE.. (original name was: NZ_CAUEFJ010000108.1)
  c00109_NZ_CAUE.. (original name was: NZ_CAUEFJ010000109.1)
  c00110_NZ_CAUE.. (original name was: NZ_CAUEFJ010000110.1)
  c00111_NZ_CAUE.. (original name was: NZ_CAUEFJ010000111.1)
  c00112_NZ_CAUE.. (original name was: NZ_CAUEFJ010000112.1)
  c00113_NZ_CAUE.. (original name was: NZ_CAUEFJ010000113.1)
  c00114_NZ_CAUE.. (original name was: NZ_CAUEFJ010000114.1)
  c00115_NZ_CAUE.. (original name was: NZ_CAUEFJ010000115.1)
  c00116_NZ_CAUE.. (original name was: NZ_CAUEFJ010000116.1)

Compact view
c00005_NZ_CAUE.. - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 62,560 - 69,225 nt. (total: 6,666 nt) Show pHMM detection rules used
Region on contig edge.
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001639.1 |  | 0.16 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0001222.1 |  | 0.15 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.15 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000548.1 |  | 0.15 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000586.1 |  | 0.15 | RiPP | microcin E492 | Klebsiella pneumoniae RYC492
BGC0000294.1 |  | 0.14 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000590.1 |  | 0.14 | RiPP | microcin N | Escherichia coli
BGC0000588.1 |  | 0.14 | RiPP | microcin L | Escherichia coli
BGC0000584.1 |  | 0.14 | RiPP | colicin V | Escherichia coli
BGC0001120.1 |  | 0.14 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001639.1 |  | 0.46 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.46 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000548.1 |  | 0.45 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000586.1 |  | 0.44 | RiPP | microcin E492 | Klebsiella pneumoniae RYC492
BGC0000294.1 |  | 0.44 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000590.1 |  | 0.44 | RiPP | microcin N | Escherichia coli
BGC0000588.1 |  | 0.44 | RiPP | microcin L | Escherichia coli
BGC0000584.1 |  | 0.44 | RiPP | colicin V | Escherichia coli
BGC0001120.1 |  | 0.44 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
c00006_NZ_CAUE.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 9,539 - 29,847 nt. (total: 20,309 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001947.1 |  | 0.18 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000758.1 |  | 0.17 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000785.1 |  | 0.16 | Saccharide | O-antigen | Burkholderia mallei
BGC0000782.1 |  | 0.16 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000760.1 |  | 0.16 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0000781.1 |  | 0.16 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001411.1 |  | 0.15 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0001747.1 |  | 0.14 | Other | pseudaminic acid | Tannerella forsythia
BGC0000794.1 |  | 0.13 | Saccharide | S-layer glycan | Geobacillus stearothermophilus
BGC0000906.1 |  | 0.13 | Other | heme D1 | Heliophilum fasciatum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001947.1 |  | 0.49 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000758.1 |  | 0.48 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000785.1 |  | 0.47 | Saccharide | O-antigen | Burkholderia mallei
BGC0000782.1 |  | 0.47 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000760.1 |  | 0.46 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0000781.1 |  | 0.46 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001411.1 |  | 0.44 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0001747.1 |  | 0.43 | Other | pseudaminic acid | Tannerella forsythia
BGC0000794.1 |  | 0.42 | Saccharide | S-layer glycan | Geobacillus stearothermophilus
BGC0000906.1 |  | 0.41 | Other | heme D1 | Heliophilum fasciatum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00101_NZ_CAUE.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 3,562 nt. (total: 3,562 nt) Show pHMM detection rules used
Region on contig edge.
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000851.1 |  | 0.10 | Other | albonoursin | Streptomyces noursei ATCC 11455
BGC0001419.1 |  | 0.04 | NRP, Polyketide | myxochromide D | Hyalangium minutum
BGC0001418.1 |  | 0.04 | NRP, Polyketide | myxochromide D | Hyalangium minutum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000851.1 |  | 0.36 | Other | albonoursin | Streptomyces noursei ATCC 11455
BGC0001419.1 |  | 0.19 | NRP, Polyketide | myxochromide D | Hyalangium minutum
BGC0001418.1 |  | 0.19 | NRP, Polyketide | myxochromide D | Hyalangium minutum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names