Select genomic region:
Overview
13.1
14.1
17.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_FWXW01000010 (original name was: NZ_FWXW01000010.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | ranthipeptide | 1 | 17,699 |

NZ_FWXW01000004 (original name was: NZ_FWXW01000004.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 14.1 | cyclic-lactone-autoinducer | 42,967 | 65,922 |

NZ_FWXW01000007 (original name was: NZ_FWXW01000007.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 17.1 | RRE-containing | 1,004 | 21,420 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | ranthipeptide | 1 | 17,699 |
Region 14.1 | cyclic-lactone-autoinducer | 42,967 | 65,922 |
Region 17.1 | RRE-containing | 1,004 | 21,420 |

No secondary metabolite regions were found in these records:
  NZ_FWXW01000019 (original name was: NZ_FWXW01000019.1)
  NZ_FWXW01000018 (original name was: NZ_FWXW01000018.1)
  NZ_FWXW01000020 (original name was: NZ_FWXW01000020.1)
  NZ_FWXW01000016 (original name was: NZ_FWXW01000016.1)
  NZ_FWXW01000017 (original name was: NZ_FWXW01000017.1)
  NZ_FWXW01000014 (original name was: NZ_FWXW01000014.1)
  NZ_FWXW01000013 (original name was: NZ_FWXW01000013.1)
  NZ_FWXW01000011 (original name was: NZ_FWXW01000011.1)
  NZ_FWXW01000001 (original name was: NZ_FWXW01000001.1)
  NZ_FWXW01000002 (original name was: NZ_FWXW01000002.1)
  NZ_FWXW01000006 (original name was: NZ_FWXW01000006.1)
  NZ_FWXW01000003 (original name was: NZ_FWXW01000003.1)
  NZ_FWXW01000005 (original name was: NZ_FWXW01000005.1)
  NZ_FWXW01000015 (original name was: NZ_FWXW01000015.1)
  NZ_FWXW01000012 (original name was: NZ_FWXW01000012.1)
  NZ_FWXW01000008 (original name was: NZ_FWXW01000008.1)
  NZ_FWXW01000009 (original name was: NZ_FWXW01000009.1)

Compact view
c00013_NZ_FWXW.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 17,699 nt. (total: 17,699 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000599.1 |  | 0.11 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000695.1 |  | 0.09 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0000807.1 |  | 0.07 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000397.1 |  | 0.06 | NRP | nostocyclopeptide A2 | Nostoc sp. ATCC 53789
BGC0001028.1 |  | 0.05 | NRP, Polyketide | nostopeptolide A2 | Nostoc sp. GSV224
BGC0000430.1 |  | 0.03 | NRP, Polyketide | spumigin E | Nodularia spumigena CCY9414
BGC0000413.1 |  | 0.03 | NRP | pyoverdin | Pseudomonas protegens Pf-5
BGC0000299.1 |  | 0.03 | NRP | alterochromide A, bromoalterochromide A, dibromoalterochromide A, alterochromide B, bromoalterochromide B, dibromoalterochromide B, alterochromide A', bromoalterochromide A', dibromoalterochromide A', alterochromide B', bromoalterochromide B', dibromoalterochromide B', alterochromide A'', bromoalterochromide A'', alterochromide B'', bromoalterochromide B'' | Pseudoalteromonas piscicida JCM 20779

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000599.1 |  | 0.38 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000695.1 |  | 0.33 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0000807.1 |  | 0.29 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000397.1 |  | 0.24 | NRP | nostocyclopeptide A2 | Nostoc sp. ATCC 53789
BGC0001028.1 |  | 0.22 | NRP, Polyketide | nostopeptolide A2 | Nostoc sp. GSV224
BGC0000430.1 |  | 0.17 | NRP, Polyketide | spumigin E | Nodularia spumigena CCY9414
BGC0000413.1 |  | 0.15 | NRP | pyoverdin | Pseudomonas protegens Pf-5
BGC0000299.1 |  | 0.14 | NRP | alterochromide A, bromoalterochromide A, dibromoalterochromide A, alterochromide B, bromoalterochromide B, dibromoalterochromide B, alterochromide A', bromoalterochromide A', dibromoalterochromide A', alterochromide B', bromoalterochromide B', dibromoalterochromide B', alterochromide A'', bromoalterochromide A'', alterochromide B'', bromoalterochromide B'' | Pseudoalteromonas piscicida JCM 20779

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00014_NZ_FWXW.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 42,967 - 65,922 nt. (total: 22,956 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000558.1 |  | 0.16 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0001371.1 |  | 0.09 | NRP | echinocandin B | Aspergillus nidulans NRRL 8112
BGC0001669.1 |  | 0.08 | RiPP | microvionin | Microbacterium arborescens
BGC0000240.1 |  | 0.05 | Polyketide, Saccharide | lomaiviticin A, lomaiviticin C, lomaiviticin D, lomaiviticin E | Salinispora pacifica
BGC0001590.1 |  | 0.05 | Polyketide | formicamycins A-M | Streptomyces sp. KY5
BGC0001979.1 |  | 0.04 | Polyketide | LL-D49194α1 (LLD) | Streptomyces vinaceusdrappus
BGC0001059.1 |  | 0.03 | NRP, Polyketide | zwittermicin A | Bacillus cereus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000558.1 |  | 0.46 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0001371.1 |  | 0.34 | NRP | echinocandin B | Aspergillus nidulans NRRL 8112
BGC0001669.1 |  | 0.31 | RiPP | microvionin | Microbacterium arborescens
BGC0000240.1 |  | 0.22 | Polyketide, Saccharide | lomaiviticin A, lomaiviticin C, lomaiviticin D, lomaiviticin E | Salinispora pacifica
BGC0001590.1 |  | 0.21 | Polyketide | formicamycins A-M | Streptomyces sp. KY5
BGC0001979.1 |  | 0.20 | Polyketide | LL-D49194α1 (LLD) | Streptomyces vinaceusdrappus
BGC0001059.1 |  | 0.17 | NRP, Polyketide | zwittermicin A | Bacillus cereus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00017_NZ_FWXW.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,004 - 21,420 nt. (total: 20,417 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000644.1 |  | 0.19 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0001610.1 |  | 0.16 | Other | gougerotin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000762.1 |  | 0.16 | Saccharide | exopolysaccharide | Rhizobium leguminosarum bv. viciae
BGC0000748.1 |  | 0.16 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000740.1 |  | 0.16 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000747.1 |  | 0.16 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000746.1 |  | 0.16 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000752.1 |  | 0.16 | Saccharide | capsular polysaccharide | Actinobacillus pleuropneumoniae serovar 6 str. Femo
BGC0000763.1 |  | 0.16 | Saccharide | stewartan | Pantoea stewartii subsp. stewartii DC283
BGC0000776.1 |  | 0.16 | Saccharide | lipopolysaccharide | Escherichia coli

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000644.1 |  | 0.51 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0001610.1 |  | 0.47 | Other | gougerotin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000762.1 |  | 0.47 | Saccharide | exopolysaccharide | Rhizobium leguminosarum bv. viciae
BGC0000748.1 |  | 0.47 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000740.1 |  | 0.47 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000747.1 |  | 0.47 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000746.1 |  | 0.47 | Saccharide | capsular polysaccharide | Streptococcus agalactiae
BGC0000752.1 |  | 0.47 | Saccharide | capsular polysaccharide | Actinobacillus pleuropneumoniae serovar 6 str. Femo
BGC0000763.1 |  | 0.46 | Saccharide | stewartan | Pantoea stewartii subsp. stewartii DC283
BGC0000776.1 |  | 0.46 | Saccharide | lipopolysaccharide | Escherichia coli

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names